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GU071095.1__ADO97499.1__SSM2_157__00155
Bact-VirGU071095.1__ADO97499.1__SSM2_157__00155
Identity
- Accession:
- GU071095 ↗
- Kingdom:
- phage
Quality
74.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nilusvirus›
Synechococcus_phage_S-SM2
TaxID: 444860
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-98
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 43.0 | 4.79e-01 | 80.2% | 82.1% |
| 2j16A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.67 | 41.0 | 3.58e-01 | 81.4% | 39.8% |
| 4ex6A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 39.0 | 4.39e-01 | 80.2% | 79.1% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.62 | 47.0 | 4.70e-01 | 88.4% | 79.8% |
| 3gxvB00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.62 | 41.0 | 3.60e-01 | 75.6% | 47.2% |
| 2do7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 4.90e-01 | 89.5% | 92.5% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 4.44e-01 | 84.9% | 89.0% |
| 1rdfA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 43.0 | 4.49e-01 | 79.1% | 88.5% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.58 | 45.0 | 4.32e-01 | 86.0% | 77.8% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 41.0 | 3.90e-01 | 90.7% | 63.1% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 41.0 | 3.90e-01 | 100.0% | 62.3% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 37.0 | 3.63e-01 | 82.6% | 61.7% |
| 3a98B01 | 6.10.10.90 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › | 0.56 | 32.0 | 3.30e-01 | 100.0% | 59.3% |
| 2nnwA02 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 38.0 | 3.40e-01 | 94.2% | 48.8% |
| 3n0aA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 46.0 | 3.64e-01 | 93.0% | 58.6% |
| 2h7bA01 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.53 | 41.0 | 3.98e-01 | 83.7% | 88.5% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 36.0 | 3.65e-01 | 94.2% | 77.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3488594 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.68 | 51.0 | 5.46e-01 | 82.6% | 98.6% |
| 3999011 | 101.1.1.244 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS | 0.68 | 43.0 | 5.03e-01 | 76.7% | 100.0% |
| 3221809 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.66 | 44.0 | 4.98e-01 | 73.3% | 96.7% |
| 3618842 | 101.1.1.244 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS | 0.66 | 43.0 | 4.70e-01 | 80.2% | 82.9% |
| 4025053 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.65 | 51.0 | 4.95e-01 | 84.9% | 96.8% |
| 3726085 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.64 | 49.0 | 4.97e-01 | 90.7% | 83.5% |
| 3236724 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 5.20e-01 | 96.5% | 83.8% |
| 4961796 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.64 | 40.0 | 4.01e-01 | 90.7% | 61.1% |
| 3942501 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 4.61e-01 | 79.1% | 90.0% |
| 5057299 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.63 | 49.0 | 4.77e-01 | 97.7% | 76.8% |
| 3858057 | 101.42.1.1 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 | 0.61 | 44.0 | 4.61e-01 | 76.7% | 86.7% |
| 3247967 | 101.1.1.28 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SWIRM | 0.61 | 46.0 | 4.58e-01 | 100.0% | 77.8% |
| 3467284 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.61 | 51.0 | 4.73e-01 | 91.9% | 82.4% |
| 3833019 | 101.1.1.138 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD | 0.61 | 51.0 | 4.86e-01 | 95.3% | 91.4% |
| 3783816 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 48.0 | 4.53e-01 | 98.8% | 70.0% |
| 3841412 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.60 | 50.0 | 4.56e-01 | 91.9% | 76.5% |
| 4940271 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.59 | 45.0 | 4.52e-01 | 84.9% | 87.8% |
| 3167236 | 148.1.3.31 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD | 0.58 | 47.0 | 4.81e-01 | 93.0% | 91.8% |
| 3315608 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.57 | 44.0 | 4.14e-01 | 87.2% | 67.6% |
| 4260268 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.57 | 46.0 | 3.47e-01 | 89.5% | 64.7% |
| 3937102 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 46.0 | 3.71e-01 | 98.8% | 55.6% |
| 3517207 | 4218.1.1.1 ↗ | alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH | 0.53 | 43.0 | 4.29e-01 | 91.9% | 85.6% |
D2
high
residues 111-171