←Back to structures

GU071095.1__ADO97504.1__SSM2_163__00160

Bact-Vir

GU071095.1__ADO97504.1__SSM2_163__00160

Identity

Accession:
GU071095 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Nilusvirus› Synechococcus_phage_S-SM2

TaxID: 444860

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-47
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00112__D456-513
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ehmA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.67 59.0 4.25e-01 100.0% 95.8%
8inhA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.64 53.0 3.30e-01 97.6% 35.9%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 45.0 4.39e-01 78.6% 97.9%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.35e-01 73.8% 97.8%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.63 49.0 3.73e-01 100.0% 37.9%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.00e-01 100.0% 84.8%
5lo9A01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 47.0 3.87e-01 100.0% 65.1%
4b7yD00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 42.0 3.25e-01 81.0% 89.7%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 51.0 3.66e-01 100.0% 38.9%
8gy3A02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.55 45.0 3.30e-01 97.6% 36.5%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 42.0 3.43e-01 97.6% 46.1%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.54 46.0 3.10e-01 100.0% 26.5%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.54 46.0 2.90e-01 100.0% 57.3%
5dkoA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.54 47.0 3.13e-01 100.0% 92.2%
3d0wA00 1.10.760.20 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 0.52 41.0 3.47e-01 100.0% 86.0%
1ikpA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.52 38.0 2.77e-01 95.2% 24.7%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 41.0 3.44e-01 85.7% 100.0%
1u5kA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.51 41.0 3.00e-01 95.2% 31.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 37.0 2.62e-01 95.2% 33.0%
2r4gA02 1.10.10.1970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like 0.50 41.0 3.63e-01 100.0% 60.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973583 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 55.0 2.99e-01 100.0% 5.4%
2556 101.1.1.43 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.64 45.0 4.39e-01 78.6% 97.9%
3970398 107.1.1.1 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C 0.60 48.0 3.85e-01 100.0% 55.0%
3958995 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 43.0 3.79e-01 85.7% 51.6%
3682134 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 47.0 4.18e-01 90.5% 78.3%
4979317 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.56 40.0 3.16e-01 76.2% 81.2%
4878766 1075.4.1.9 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane 0.55 37.0 2.68e-01 100.0% 24.0%
4969755 6128.1.1.0 ↗ 0.54 43.0 3.98e-01 100.0% 69.1%
3712758 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.54 45.0 3.29e-01 100.0% 33.9%
3772031 5001.1.1.9 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R 0.54 45.0 2.70e-01 95.2% 13.2%
3639520 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.53 41.0 2.60e-01 100.0% 58.7%
3754592 5001.1.1.9 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R 0.52 43.0 2.61e-01 92.9% 72.3%
5080635 5059.1.1.17 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM234 0.51 45.0 3.29e-01 100.0% 97.4%