←Back to structures
GU071097.1__ADO98006.1__SSSM5_064__00061
Bact-VirGU071097.1__ADO98006.1__SSSM5_064__00061
Identity
- Accession:
- GU071097 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Glaucusvirus›
Synechococcus_phage_S-SSM5
TaxID: 445685
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-67
Domain cluster:
rep: MT408532.1__QJT70081.1__SynMITS9220M01_068__00065__D2-67
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vvlA02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.59 | 51.0 | 3.59e-01 | 100.0% | 37.4% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.59 | 45.0 | 4.02e-01 | 84.8% | 83.7% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 44.0 | 4.02e-01 | 84.8% | 88.2% |
| 3h5xA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 45.0 | 3.85e-01 | 90.9% | 76.7% |
| 5wpjA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.56 | 43.0 | 3.79e-01 | 86.4% | 93.5% |
| 4i6yA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.56 | 46.0 | 3.93e-01 | 92.4% | 92.7% |
| 3n01A00 | 3.30.70.2470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain | 0.55 | 42.0 | 3.89e-01 | 84.8% | 96.6% |
| 1yueA02 | 2.10.10.40 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.53 | 37.0 | 3.83e-01 | 86.4% | 80.3% |
| 1vioA03 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.53 | 46.0 | 4.30e-01 | 100.0% | 93.9% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 45.0 | 4.36e-01 | 100.0% | 96.0% |
| 1r0xD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 37.0 | 2.58e-01 | 78.8% | 23.6% |
| 2b9wA03 | 3.30.70.1990 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.78e-01 | 97.0% | 95.8% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.53e-01 | 97.0% | 96.6% |
| 1mw7A03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.50 | 41.0 | 3.97e-01 | 95.5% | 93.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4448039 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.57 | 47.0 | 4.32e-01 | 93.9% | 86.7% |
| 3218110 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.55 | 46.0 | 4.50e-01 | 95.5% | 97.3% |
| 4935957 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.55 | 47.0 | 4.55e-01 | 100.0% | 94.7% |
| 3739419 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.55 | 45.0 | 4.09e-01 | 93.9% | 82.1% |
| 5025693 | 304.3.1.23 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › TiaS_FLD | 0.55 | 42.0 | 3.75e-01 | 83.3% | 89.5% |
| 4992190 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.53 | 45.0 | 4.48e-01 | 98.5% | 100.0% |
| 3409855 | 3377.1.1.1 ↗ | a+b two layers › Diedel › Diedel › Diedel › Diedel | 0.53 | 45.0 | 4.15e-01 | 100.0% | 96.7% |
| 3862518 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.52 | 33.0 | 3.51e-01 | 100.0% | 76.4% |
| 3198690 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.52 | 41.0 | 4.07e-01 | 87.9% | 90.0% |
| 4956884 | 304.30.1.1 ↗ | a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A | 0.51 | 39.0 | 3.80e-01 | 84.8% | 94.7% |
| 4958616 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.51 | 40.0 | 3.90e-01 | 87.9% | 94.7% |