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GU071104.1__ADP00157.1__CYPG_00017__00016
Bact-VirGU071104.1__ADP00157.1__CYPG_00017__00016
Identity
- Accession:
- GU071104 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Tangaroavirus›
Cyanophage_NATL2A-133
TaxID: 445692
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-107
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4zi3D00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.71 | 50.0 | 4.45e-01 | 95.7% | 52.3% |
| 3doeB00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.67 | 48.0 | 4.53e-01 | 97.8% | 60.5% |
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 26.0 | 3.10e-01 | 97.8% | 48.4% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.64 | 40.0 | 3.74e-01 | 95.7% | 47.9% |
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.64 | 24.0 | 3.33e-01 | 83.7% | 68.1% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.63 | 37.0 | 3.61e-01 | 89.1% | 51.5% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 42.0 | 4.23e-01 | 98.9% | 66.7% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 40.0 | 3.54e-01 | 84.8% | 43.4% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.60 | 41.0 | 3.50e-01 | 96.7% | 42.5% |
| 1yjgA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.58 | 49.0 | 4.12e-01 | 93.5% | 94.9% |
| 5ulcX00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 42.0 | 3.86e-01 | 78.3% | 100.0% |
| 3rbtA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 35.0 | 3.24e-01 | 82.6% | 51.3% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 38.0 | 3.41e-01 | 81.5% | 50.7% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 44.0 | 4.29e-01 | 88.0% | 91.0% |
| 3u2rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.98e-01 | 94.6% | 94.1% |
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 31.0 | 2.94e-01 | 78.3% | 45.8% |
| 1l6nA02 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.50 | 43.0 | 3.94e-01 | 100.0% | 94.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269933 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.62 | 33.0 | 3.71e-01 | 100.0% | 65.7% |
| 5042372 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.61 | 53.0 | 5.08e-01 | 95.7% | 98.1% |
| 4508874 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.59 | 45.0 | 4.53e-01 | 92.4% | 80.0% |
| 3689543 | 3922.1.1.227 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF6594 | 0.58 | 41.0 | 4.27e-01 | 81.5% | 80.0% |
| 3728803 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 44.0 | 3.65e-01 | 81.5% | 100.0% |
| 5028472 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.57 | 39.0 | 3.98e-01 | 93.5% | 72.2% |
| 3655694 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.56 | 39.0 | 4.10e-01 | 85.9% | 78.8% |
| 3724169 | 4992.1.1.10 ↗ | extended segments › RelB-like › RelB-like › RelB-like › DUF6594 | 0.56 | 44.0 | 4.52e-01 | 84.8% | 92.2% |
| 4553515 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.56 | 34.0 | 3.59e-01 | 89.1% | 67.1% |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.55 | 40.0 | 3.46e-01 | 84.8% | 47.3% |
| 3632380 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 42.0 | 3.20e-01 | 82.6% | 96.6% |
| 3671315 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.54 | 46.0 | 3.64e-01 | 95.7% | 91.0% |
| 4976125 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.54 | 45.0 | 4.33e-01 | 91.3% | 93.3% |
| 3900656 | 3831.1.1.6 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › POF1B_HlH | 0.53 | 40.0 | 4.13e-01 | 100.0% | 84.7% |
| 3648986 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 44.0 | 3.29e-01 | 96.7% | 91.8% |
| 3964115 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.52 | 43.0 | 3.91e-01 | 94.6% | 98.5% |
| 3786373 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.51 | 46.0 | 3.42e-01 | 100.0% | 44.6% |
| 4972215 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 38.0 | 2.91e-01 | 78.3% | 91.9% |
| 4026679 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.51 | 42.0 | 3.17e-01 | 93.5% | 72.2% |
| 3239087 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.51 | 42.0 | 3.98e-01 | 92.4% | 83.5% |
| 4531337 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.50 | 38.0 | 3.53e-01 | 83.7% | 63.5% |