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GU071107.1__ADP00221.1__CYLG_00018__00018

Bact-Vir

GU071107.1__ADP00221.1__CYLG_00018__00018

Identity

Accession:
GU071107 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-67
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 56.0 4.73e-01 76.7% 49.0%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 52.0 5.00e-01 73.3% 75.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.73 55.0 4.69e-01 81.7% 50.5%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.72 51.0 4.36e-01 75.0% 73.2%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.71 57.0 4.22e-01 88.3% 71.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 49.0 4.95e-01 75.0% 93.3%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.69 52.0 3.80e-01 96.7% 30.2%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.69 54.0 4.49e-01 85.0% 63.1%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 48.0 3.94e-01 73.3% 41.3%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.68 51.0 3.95e-01 81.7% 83.2%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.68 48.0 4.26e-01 76.7% 84.6%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.67 47.0 4.08e-01 75.0% 47.4%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 46.0 3.68e-01 81.7% 36.7%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.65 46.0 4.51e-01 75.0% 68.2%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.64 48.0 4.26e-01 81.7% 54.5%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 46.0 3.40e-01 76.7% 50.9%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 48.0 4.38e-01 88.3% 58.8%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 46.0 3.76e-01 76.7% 45.0%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.64 43.0 4.23e-01 76.7% 64.2%
2uuiA00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.64 47.0 3.42e-01 81.7% 30.3%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.63 55.0 3.87e-01 100.0% 36.0%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.63 45.0 4.11e-01 78.3% 58.8%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.62 46.0 4.12e-01 81.7% 61.4%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.61 53.0 4.76e-01 100.0% 72.4%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 44.0 3.59e-01 81.7% 39.8%
1bf5A01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.61 46.0 3.35e-01 81.7% 29.2%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 45.0 3.71e-01 83.3% 45.3%
3iylB02 1.10.2050.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 0.60 42.0 3.27e-01 75.0% 100.0%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 46.0 3.83e-01 88.3% 51.8%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 4.19e-01 78.3% 73.0%
3bg2A02 1.10.3550.10 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like 0.59 43.0 3.56e-01 80.0% 86.6%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 49.0 3.04e-01 96.7% 16.6%
5m43A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 43.0 3.23e-01 81.7% 95.2%
4q4hA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.58 48.0 3.12e-01 96.7% 38.7%
4znmA01 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.58 51.0 3.36e-01 100.0% 34.4%
4m52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 42.0 2.93e-01 83.3% 22.1%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 47.0 4.46e-01 96.7% 78.7%
1dliA03 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 38.0 3.42e-01 73.3% 66.7%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.55 47.0 2.94e-01 98.3% 90.0%
2h5gB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 45.0 3.02e-01 100.0% 31.8%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 44.0 3.48e-01 96.7% 48.9%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.54 38.0 3.40e-01 96.7% 50.0%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.54 45.0 2.91e-01 100.0% 69.2%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.53 44.0 3.97e-01 96.7% 65.2%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 44.0 3.52e-01 100.0% 81.4%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 3.98e-01 96.7% 96.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3471120 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.76 56.0 5.50e-01 81.7% 72.3%
1503095 192.27.1.1 alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase › TrmK 0.74 52.0 4.96e-01 73.3% 73.9%
3702706 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.73 49.0 4.45e-01 70.0% 100.0%
3970522 5050.1.1.54 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Mntp 0.72 51.0 3.60e-01 75.0% 97.3%
3585791 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.71 51.0 4.71e-01 75.0% 60.0%
3914665 604.5.1.10 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › HRG 0.71 51.0 3.78e-01 75.0% 31.2%
4986986 3633.1.1.0 alpha duplicates or obligate multimers › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor 0.71 50.0 3.46e-01 75.0% 26.8%
4020464 1203.1.2.4 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Vps55 0.71 53.0 4.10e-01 80.0% 52.7%
3935017 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 50.0 4.57e-01 75.0% 56.2%
3171529 5025.1.1.7 extended segments › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex › Erv26 0.70 54.0 4.32e-01 85.0% 45.6%
3967983 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.70 53.0 4.78e-01 83.3% 60.0%
5045789 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.69 54.0 4.74e-01 85.0% 58.4%
3654714 5086.1.1.89 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF21A_4th 0.69 52.0 3.60e-01 81.7% 25.6%
5036796 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.68 50.0 3.89e-01 80.0% 44.3%
3531423 5106.1.1.14 extended segments › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › TMEM174 0.68 48.0 4.95e-01 75.0% 94.5%
3873540 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.68 53.0 3.87e-01 86.7% 38.2%
3416952 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.68 50.0 3.81e-01 81.7% 34.8%
3774397 150.5.1.67 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › NEDD4_Bsd2 0.66 58.0 4.93e-01 96.7% 67.4%
3921243 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.65 49.0 2.79e-01 81.7% 7.6%
4279523 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 49.0 3.29e-01 83.3% 21.8%
3383195 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 49.0 3.36e-01 81.7% 71.4%
3990854 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.65 46.0 4.05e-01 75.0% 87.8%
3719989 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 52.0 4.05e-01 88.3% 67.4%
3247041 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.64 49.0 3.79e-01 85.0% 50.7%
3667987 1079.1.1.0 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA 0.63 53.0 3.77e-01 100.0% 74.0%
3699463 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 49.0 3.39e-01 88.3% 48.8%
3581368 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 46.0 3.46e-01 80.0% 67.3%
3282638 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 50.0 3.91e-01 91.7% 54.8%
4285687 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.61 54.0 4.13e-01 98.3% 94.1%
4481481 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.61 54.0 3.83e-01 98.3% 94.3%
4020278 1075.4.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.60 47.0 3.05e-01 91.7% 67.8%
4475717 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.60 53.0 3.82e-01 98.3% 93.5%
5037317 3110.1.1.19 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3 0.60 52.0 3.04e-01 100.0% 11.7%
3353826 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.59 52.0 4.42e-01 100.0% 79.0%
4818504 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.59 44.0 3.32e-01 81.7% 44.7%
4980755 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 47.0 3.65e-01 91.7% 61.4%
3509201 1008.1.1.1 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36_C 0.58 44.0 3.95e-01 81.7% 58.8%
4201757 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.58 52.0 3.92e-01 100.0% 94.5%
4501680 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.58 52.0 3.95e-01 100.0% 92.9%
4444553 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.58 47.0 3.07e-01 100.0% 24.6%
3728321 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.57 44.0 2.92e-01 85.0% 85.0%
5052188 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 48.0 2.97e-01 100.0% 20.7%
5038898 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.57 39.0 2.91e-01 73.3% 31.6%
4890998 148.1.3.28 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 0.57 49.0 3.14e-01 100.0% 58.1%
4169238 6130.1.1.1 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.56 40.0 3.77e-01 76.7% 61.3%
4588511 109.3.1.1 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.56 48.0 3.19e-01 100.0% 55.7%
3434967 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.56 44.0 4.06e-01 93.3% 85.9%
3621723 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.55 46.0 3.12e-01 98.3% 35.2%
3720892 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 45.0 3.53e-01 98.3% 44.3%
3288931 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.54 43.0 2.76e-01 91.7% 35.2%
5074716 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.53 41.0 3.26e-01 81.7% 80.0%
3601239 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.52 44.0 3.06e-01 98.3% 83.1%
4949008 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 43.0 3.02e-01 96.7% 60.0%
3797019 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 37.0 2.50e-01 83.3% 16.7%
3419529 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.50 38.0 3.28e-01 80.0% 62.2%