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GU075905.1__ADO99827.1__PHM2_049__00049

Bact-Vir

GU075905.1__ADO99827.1__PHM2_049__00049

Identity

Accession:
GU075905 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_P-HM2

TaxID: 445696

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: rep: KU594606.1__AMO43059.1__R1080702_050__00044__D7-59
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 54.0 5.94e-01 100.0% 88.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 5.16e-01 100.0% 61.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 53.0 5.82e-01 100.0% 90.0%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 4.69e-01 100.0% 51.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 51.0 5.63e-01 100.0% 86.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.59e-01 100.0% 83.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 51.0 5.68e-01 100.0% 93.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 54.0 5.68e-01 100.0% 86.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 52.0 5.12e-01 100.0% 69.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 52.0 5.56e-01 100.0% 87.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.40e-01 100.0% 83.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.42e-01 100.0% 83.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 4.30e-01 100.0% 47.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.60e-01 100.0% 98.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 45.0 5.08e-01 90.6% 91.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.08e-01 100.0% 81.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.05e-01 100.0% 77.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.12e-01 100.0% 67.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.95e-01 100.0% 75.8%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.28e-01 100.0% 46.4%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.04e-01 100.0% 74.3%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.67 30.0 3.29e-01 100.0% 47.3%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.65 56.0 4.14e-01 100.0% 78.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.64 53.0 4.38e-01 100.0% 52.3%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 52.0 3.74e-01 93.8% 68.5%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.09e-01 100.0% 86.4%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.62 54.0 4.67e-01 100.0% 62.9%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 49.0 3.57e-01 93.8% 69.6%
4qy7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 4.23e-01 84.4% 98.9%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 49.0 3.93e-01 93.8% 72.6%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 3.56e-01 93.8% 68.6%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.90e-01 100.0% 80.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.45e-01 93.8% 59.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.81e-01 100.0% 69.2%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.53 46.0 3.94e-01 95.3% 61.0%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.48e-01 93.8% 88.9%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 47.0 3.24e-01 100.0% 34.1%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 41.0 3.31e-01 90.6% 44.1%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.49e-01 93.8% 86.3%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 44.0 3.61e-01 98.4% 64.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.81e-01 100.0% 65.9%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.51 39.0 3.44e-01 89.1% 75.5%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 42.0 3.20e-01 100.0% 93.2%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 62.0 5.44e-01 100.0% 54.4%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 59.0 6.35e-01 100.0% 85.5%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 57.0 5.27e-01 100.0% 57.5%
3999723 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 57.0 4.22e-01 100.0% 30.7%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 54.0 5.40e-01 100.0% 67.7%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 58.0 5.17e-01 100.0% 54.4%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 55.0 4.91e-01 100.0% 51.1%
3881117 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 58.0 4.99e-01 100.0% 49.0%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 55.0 4.87e-01 100.0% 51.1%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 54.0 5.75e-01 100.0% 81.8%
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 57.0 6.05e-01 100.0% 89.1%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 53.0 4.83e-01 100.0% 54.1%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.19e-01 100.0% 65.7%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 53.0 4.82e-01 100.0% 54.1%
3833030 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.77 52.0 4.04e-01 100.0% 33.3%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.78e-01 100.0% 81.0%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.20e-01 100.0% 60.0%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.39e-01 100.0% 76.7%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 53.0 4.68e-01 100.0% 51.1%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.45e-01 100.0% 76.7%
3261235 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 56.0 5.09e-01 100.0% 58.8%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.11e-01 100.0% 65.7%
3389177 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 52.0 4.49e-01 100.0% 46.0%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 52.0 5.40e-01 100.0% 76.7%
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 52.0 5.08e-01 100.0% 65.7%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 52.0 4.64e-01 100.0% 51.1%
3840679 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 52.0 4.53e-01 100.0% 48.4%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 54.0 4.87e-01 100.0% 56.5%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 52.0 5.50e-01 100.0% 83.6%
3294392 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.75 52.0 4.69e-01 100.0% 54.1%
3936468 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 55.0 4.72e-01 100.0% 50.0%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.75 51.0 5.46e-01 100.0% 83.6%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 51.0 4.57e-01 100.0% 51.1%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.47e-01 100.0% 78.1%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 4.97e-01 100.0% 61.3%
3541241 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.74 51.0 5.31e-01 100.0% 78.3%
4985969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.21e-01 100.0% 76.7%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.74 51.0 4.34e-01 100.0% 44.8%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.71 51.0 5.14e-01 100.0% 75.4%
3514522 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 64.0 6.07e-01 100.0% 86.7%
4026957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.23e-01 100.0% 83.3%
5047239 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.48e-01 100.0% 85.9%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.37e-01 100.0% 78.7%
3736175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.63e-01 100.0% 61.2%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 58.0 5.34e-01 100.0% 75.0%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.40e-01 100.0% 76.5%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.20e-01 100.0% 81.4%
4287081 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 53.0 4.25e-01 92.2% 72.8%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.16e-01 100.0% 85.7%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.00e-01 100.0% 72.9%
3729666 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.35e-01 100.0% 53.6%
3590858 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.20e-01 96.9% 91.7%
4228570 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 5.14e-01 100.0% 78.8%
3243255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.82e-01 89.1% 84.0%
4952498 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 53.0 4.61e-01 100.0% 61.6%
3587030 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.98e-01 100.0% 81.4%
3705036 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 43.0 3.02e-01 71.9% 24.7%
3588736 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.05e-01 98.4% 86.2%
5048425 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.00e-01 100.0% 96.2%
3637664 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 53.0 4.35e-01 100.0% 52.5%
4196537 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.61 49.0 4.72e-01 95.3% 76.0%
4373611 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.61 54.0 3.95e-01 100.0% 54.3%
4278184 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.60 49.0 4.59e-01 100.0% 72.5%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.60 53.0 4.88e-01 100.0% 82.4%
2407461 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 50.0 3.94e-01 92.2% 68.7%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.59 44.0 3.64e-01 100.0% 42.4%
3183270 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 4.19e-01 100.0% 69.1%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 54.0 4.86e-01 100.0% 75.3%
3740052 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.54 46.0 3.87e-01 100.0% 69.2%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 48.0 4.24e-01 100.0% 75.5%
4466445 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.54 46.0 3.57e-01 100.0% 74.2%
5030199 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.54 45.0 2.90e-01 100.0% 19.7%
4001388 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 43.0 2.82e-01 89.1% 19.7%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.53 48.0 3.61e-01 100.0% 44.0%
2466103 265.1.1.2 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Phage_coat 0.52 42.0 3.30e-01 90.6% 42.7%
3509180 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.52 43.0 3.30e-01 100.0% 94.9%
3702416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 46.0 3.98e-01 100.0% 65.0%
3719529 7516.1.1.32 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › GlcNAc 0.52 36.0 2.26e-01 75.0% 14.3%
3879785 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.51 39.0 3.37e-01 85.9% 88.2%
4204477 1.1.5.81 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF27476 0.51 42.0 3.70e-01 92.2% 81.9%