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GU075905.1__ADO99942.1__PHM2_164__00164

Bact-Vir

GU075905.1__ADO99942.1__PHM2_164__00164

Identity

Accession:
GU075905 ↗
Kingdom:
phage

Quality

65.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-113
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.69 37.0 5.00e-01 73.6% 98.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 5.35e-01 72.7% 98.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.67 42.0 4.25e-01 80.0% 64.2%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 42.0 5.25e-01 72.7% 98.6%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.61 38.0 4.60e-01 80.9% 94.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.12e-01 80.0% 76.0%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.80e-01 83.6% 100.0%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.54 35.0 3.15e-01 75.5% 48.6%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 4.28e-01 85.5% 98.8%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.28e-01 75.5% 93.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 42.0 5.69e-01 73.6% 100.0%
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.71 36.0 5.03e-01 76.4% 100.0%
5019383 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 42.0 4.96e-01 89.1% 88.0%
3839972 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 43.0 5.10e-01 75.5% 98.7%
3541996 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.63 35.0 2.90e-01 71.8% 32.6%
3428486 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 43.0 5.08e-01 75.5% 100.0%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.60 45.0 4.43e-01 76.4% 100.0%
3627869 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.57 49.0 4.30e-01 90.9% 78.1%
3775592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 39.0 2.18e-01 70.9% 42.1%
3574613 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 38.0 3.99e-01 70.0% 76.0%
D2 high residues 192-260
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 47.0 5.35e-01 72.5% 95.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.09e-01 75.4% 81.4%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 4.86e-01 78.3% 88.4%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 54.0 4.30e-01 85.5% 96.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 48.0 4.86e-01 73.9% 84.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 48.0 5.12e-01 73.9% 98.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 50.0 5.10e-01 76.8% 98.5%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 47.0 4.79e-01 72.5% 94.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 46.0 4.71e-01 71.0% 100.0%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 46.0 4.60e-01 71.0% 85.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.08e-01 82.6% 86.8%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.03e-01 84.1% 100.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 4.71e-01 79.7% 82.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.99e-01 82.6% 81.2%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 4.45e-01 72.5% 78.4%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.64 49.0 4.05e-01 84.1% 47.7%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.35e-01 81.2% 85.6%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 5.00e-01 81.2% 98.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 43.0 4.34e-01 73.9% 92.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 44.0 4.35e-01 79.7% 82.7%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 44.0 4.46e-01 79.7% 91.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 4.89e-01 85.5% 100.0%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.33e-01 78.3% 88.9%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.44e-01 82.6% 91.8%
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 43.0 3.49e-01 79.7% 66.7%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 40.0 4.30e-01 73.9% 89.8%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.79e-01 75.4% 73.9%
1d4cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 43.0 2.89e-01 85.5% 77.3%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 42.0 2.74e-01 87.0% 29.9%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 3.26e-01 75.4% 94.7%
2wesA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.58e-01 87.0% 43.8%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 39.0 3.18e-01 79.7% 95.0%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.59e-01 71.0% 76.7%
1ydwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 37.0 2.74e-01 76.8% 71.2%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.52 42.0 3.06e-01 94.2% 88.3%
1b98A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.52 38.0 3.33e-01 76.8% 79.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 35.0 3.61e-01 72.5% 83.6%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 40.0 3.16e-01 94.2% 89.8%
3lrrA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.51 39.0 3.37e-01 88.4% 96.7%
1c3kA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 39.0 3.21e-01 88.4% 88.1%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.50 38.0 3.45e-01 85.5% 96.1%
4p25D01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.50 37.0 2.83e-01 84.1% 92.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3505711 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.82 62.0 5.75e-01 79.7% 71.8%
3505589 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.81 60.0 4.86e-01 76.8% 49.2%
3237640 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.76 58.0 4.94e-01 81.2% 59.1%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.76 60.0 6.19e-01 84.1% 96.9%
3581817 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.76 55.0 5.69e-01 76.8% 90.8%
3512902 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.76 55.0 6.08e-01 76.8% 100.0%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.75 56.0 5.01e-01 78.3% 64.2%
3612090 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.69e-01 76.8% 96.7%
4964768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.84e-01 78.3% 96.7%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.73 53.0 4.42e-01 76.8% 49.2%
3517130 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.72 51.0 5.58e-01 73.9% 100.0%
3766659 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 54.0 5.79e-01 79.7% 98.3%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.71 54.0 3.95e-01 81.2% 35.1%
536 4.1.1.86 beta barrels › SH3 › SH3 › SH3 › GW 0.71 52.0 4.86e-01 78.3% 88.4%
3234923 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 48.0 5.04e-01 72.5% 96.8%
157818 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 51.0 4.62e-01 76.8% 68.1%
3531894 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 48.0 4.97e-01 73.9% 100.0%
3205517 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 47.0 4.56e-01 71.0% 86.7%
3211367 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 49.0 4.46e-01 75.4% 67.8%
4093354 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 49.0 4.89e-01 75.4% 94.3%
3213114 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 48.0 4.42e-01 75.4% 74.4%
4003181 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 47.0 4.99e-01 72.5% 100.0%
3873942 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.82e-01 72.5% 90.8%
3867384 4.1.1.50 beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.67 52.0 4.98e-01 84.1% 97.5%
3235419 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.90e-01 72.5% 91.7%
3481770 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.66 48.0 4.64e-01 78.3% 80.0%
3198697 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 47.0 3.05e-01 76.8% 29.9%
3243536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.58e-01 81.2% 76.5%
3821751 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 48.0 4.56e-01 78.3% 76.2%
5035835 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.64 46.0 4.88e-01 78.3% 96.7%
4051081 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 46.0 4.92e-01 76.8% 100.0%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 47.0 4.57e-01 76.8% 77.3%
4547406 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 47.0 4.51e-01 78.3% 73.8%
3893368 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.64 46.0 4.76e-01 76.8% 92.3%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.64 44.0 4.57e-01 72.5% 81.5%
4068131 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 46.0 4.13e-01 76.8% 61.1%
4077893 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 46.0 2.70e-01 76.8% 10.9%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 46.0 4.85e-01 78.3% 98.4%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 47.0 4.51e-01 79.7% 76.2%
3388362 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 46.0 2.64e-01 78.3% 8.8%
4339993 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 46.0 4.22e-01 78.3% 65.6%
5010554 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.62 45.0 4.63e-01 78.3% 90.8%
1557343 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.60 44.0 4.46e-01 79.7% 91.4%
9277 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.60 44.0 3.72e-01 79.7% 98.3%
4307735 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 45.0 2.87e-01 82.6% 72.8%
4055019 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.59 44.0 3.30e-01 81.2% 66.7%
3999421 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 49.0 3.09e-01 98.6% 20.0%
3648535 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.58 46.0 3.55e-01 87.0% 61.3%
None 0.58 44.0 2.80e-01 84.1% 78.7%
4162406 244.1.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.57 42.0 2.59e-01 81.2% 40.6%
3812458 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.57 42.0 3.13e-01 78.3% 58.2%
4977206 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.48e-01 79.7% 91.7%
3174528 244.1.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.56 41.0 2.64e-01 81.2% 49.1%
3562710 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.56 42.0 2.67e-01 84.1% 74.1%
4549410 506.2.1.0 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain 0.56 42.0 2.36e-01 82.6% 29.9%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.55 38.0 4.12e-01 72.5% 94.5%
4330184 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 42.0 3.54e-01 85.5% 92.0%
3916989 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.55 42.0 2.62e-01 85.5% 70.2%
3582871 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 39.0 3.02e-01 78.3% 91.4%
3991851 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 41.0 2.61e-01 85.5% 69.6%
3915992 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 42.0 2.63e-01 88.4% 70.8%
1489668 3936.1.1.1 a+b complex topology › Herpesvirus UL21 N-terminal domain › Herpesvirus UL21 N-terminal domain › Herpesvirus UL21 N-terminal domain › Herpes_UL21 0.53 38.0 2.88e-01 78.3% 77.5%
4306185 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 40.0 3.14e-01 81.2% 94.2%
3911746 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 40.0 2.52e-01 85.5% 68.0%
4970605 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 32.0 2.11e-01 71.0% 11.7%
863 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.52 39.0 3.48e-01 82.6% 96.1%
None 0.52 33.0 1.97e-01 73.9% 7.7%
4498332 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.51 35.0 2.74e-01 73.9% 81.2%
3779483 5.1.4.136 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ig_3 0.51 40.0 2.45e-01 91.3% 91.0%
D3 medium residues 371-438
PDB