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GU229986.1__ADB28380.1__X__00003

Bact-Vir

GU229986.1__ADB28380.1__X__00003

Identity

Accession:
GU229986 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-132
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF20815.4 best GIY_YIG_2 27.2 4.70e-06 92.4% 48.1%
PF01541.31 GIY-YIG 32.3 1.30e-07 72.4% 65.4%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.82 65.0 6.98e-01 82.9% 96.6%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.72 49.0 4.13e-01 70.5% 65.9%
1vkzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 40.0 4.71e-01 71.4% 100.0%
3payC01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.62e-01 79.0% 50.6%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 3.70e-01 77.1% 63.1%
5z06A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 38.0 3.28e-01 72.4% 80.3%
3gf8A01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.51e-01 79.0% 51.9%
4wd3A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 36.0 4.03e-01 71.4% 96.0%
5nfiB01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.59e-01 80.0% 59.9%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.51 34.0 3.92e-01 74.3% 95.9%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.51 37.0 3.31e-01 76.2% 83.0%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.43e-01 94.3% 52.3%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.50 38.0 3.42e-01 79.0% 64.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052958 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.93 69.0 7.89e-01 85.7% 100.0%
4236834 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.91 70.0 7.82e-01 80.0% 100.0%
4994096 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.90 70.0 7.04e-01 85.7% 80.8%
3588392 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.87 67.0 6.88e-01 79.0% 85.0%
4947741 821.1.1.17 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 0.87 68.0 7.58e-01 84.8% 100.0%
4964937 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.86 56.0 6.82e-01 75.2% 100.0%
4310838 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.86 67.0 7.42e-01 83.8% 100.0%
4974405 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.85 70.0 7.58e-01 86.7% 100.0%
4977317 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.85 70.0 6.63e-01 85.7% 74.8%
4111785 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.85 68.0 7.15e-01 83.8% 93.7%
4170310 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.84 67.0 7.21e-01 82.9% 98.9%
4515517 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.84 68.0 7.35e-01 84.8% 100.0%
3986774 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.84 66.0 6.83e-01 84.8% 87.0%
4468826 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.84 67.0 7.05e-01 83.8% 93.7%
4054044 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.83 70.0 7.16e-01 88.6% 100.0%
4945828 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.83 67.0 7.26e-01 85.7% 98.9%
5070656 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.82 64.0 7.11e-01 96.2% 100.0%
4457400 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.82 68.0 6.89e-01 87.6% 87.6%
3419007 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.81 70.0 6.79e-01 91.4% 95.7%
4980287 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.80 60.0 6.68e-01 82.9% 96.5%
5030770 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.78 67.0 7.03e-01 96.2% 100.0%
4929079 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.78 65.0 6.83e-01 92.4% 97.9%
5076895 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.77 63.0 6.22e-01 86.7% 92.7%
5070409 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.76 61.0 6.60e-01 83.8% 100.0%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.59 41.0 4.13e-01 71.4% 97.1%
3218185 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 40.0 3.21e-01 72.4% 60.9%
5022918 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.41e-01 75.2% 91.1%
D2 high residues 203-276
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.79 52.0 3.46e-01 71.6% 19.5%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.70 53.0 4.43e-01 81.1% 67.5%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 49.0 5.59e-01 78.4% 98.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 49.0 4.35e-01 74.3% 56.3%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 44.0 5.09e-01 75.7% 98.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.75e-01 73.0% 76.1%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 43.0 4.57e-01 70.3% 76.2%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.70e-01 73.0% 88.6%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.42e-01 71.6% 75.0%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.65 45.0 4.47e-01 73.0% 69.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 45.0 4.20e-01 74.3% 58.5%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.99e-01 74.3% 100.0%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.71e-01 73.0% 96.8%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 4.16e-01 71.6% 64.1%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.55e-01 78.4% 82.9%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.41e-01 74.3% 83.3%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.95e-01 70.3% 71.3%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.87e-01 86.5% 87.9%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 45.0 3.37e-01 85.1% 47.3%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.80e-01 97.3% 100.0%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 38.0 4.02e-01 70.3% 77.6%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.05e-01 85.1% 85.6%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 37.0 4.06e-01 86.5% 86.7%
6bmeA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 37.0 3.22e-01 73.0% 57.5%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.53 39.0 3.52e-01 79.7% 79.8%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 40.0 3.16e-01 89.2% 81.7%
3vadA01 1.20.140.20 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain 0.51 35.0 2.81e-01 71.6% 82.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 38.0 4.04e-01 87.8% 92.3%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 38.0 3.76e-01 79.7% 93.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932988 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 53.0 5.94e-01 73.0% 96.4%
3983783 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.76 52.0 4.74e-01 71.6% 54.7%
3590732 101.1.1.364 alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.75 46.0 5.49e-01 71.6% 100.0%
3988724 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 51.0 5.62e-01 70.3% 88.3%
None 0.75 52.0 3.52e-01 73.0% 39.6%
3913655 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.73 52.0 5.07e-01 74.3% 72.5%
3983411 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.72 49.0 4.97e-01 71.6% 72.0%
4133453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 5.32e-01 70.3% 100.0%
4977146 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.08e-01 87.8% 76.0%
5060990 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.69 49.0 3.29e-01 74.3% 37.4%
4659976 101.1.1.25 alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.69 52.0 4.20e-01 81.1% 50.3%
3376425 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.69 49.0 4.70e-01 77.0% 64.7%
4980145 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.99e-01 91.9% 68.2%
4974140 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 49.0 4.50e-01 77.0% 69.0%
3941182 101.1.1.52 alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.68 44.0 4.70e-01 70.3% 75.4%
4971221 101.1.6.42 alpha arrays › HTH › HTH › TrpR › HTH_24 0.68 56.0 4.96e-01 91.9% 71.8%
4966837 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.68 55.0 5.31e-01 89.2% 81.2%
5062184 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 43.0 4.69e-01 71.6% 81.7%
3279743 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.66 47.0 4.83e-01 74.3% 95.7%
3291186 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.66 55.0 4.89e-01 90.5% 70.5%
5072115 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.88e-01 91.9% 71.4%
4974091 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 41.0 4.23e-01 71.6% 65.7%
5064400 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 46.0 4.24e-01 74.3% 57.9%
3279510 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.65 49.0 5.28e-01 86.5% 100.0%
2332937 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.62 45.0 4.59e-01 78.4% 85.1%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.61 43.0 4.39e-01 73.0% 88.6%
4968115 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.85e-01 83.8% 91.4%
4939633 101.1.2.932 alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.61 44.0 4.75e-01 78.4% 98.4%
5041367 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.60 52.0 3.60e-01 100.0% 51.9%
3954318 101.1.1.300 alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.60 45.0 4.26e-01 81.1% 73.3%
3801792 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.59 44.0 4.45e-01 82.4% 92.0%
4962036 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.59 47.0 4.29e-01 85.1% 85.3%
5057140 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 4.45e-01 74.3% 100.0%
5013090 304.4.1.83 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 0.59 44.0 3.34e-01 81.1% 40.6%
1175650 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 45.0 4.44e-01 85.1% 89.0%
5060354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.74e-01 83.8% 95.4%
3987666 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 41.0 4.01e-01 78.4% 74.1%
3973944 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 4.19e-01 83.8% 87.5%
3626670 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.52 38.0 3.65e-01 81.1% 100.0%
1903970 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.50 43.0 3.03e-01 100.0% 61.5%