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GU233956.1__ADA84956.1__X__00016
Bact-VirGU233956.1__ADA84956.1__X__00016
Identity
- Accession:
- GU233956 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-123
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a7oA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.62 | 46.0 | 4.98e-01 | 93.5% | 94.0% |
| 2fgyA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.57 | 29.0 | 3.14e-01 | 89.4% | 53.3% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 25.0 | 3.34e-01 | 84.6% | 78.5% |
| 3q23A04 | 6.10.140.1370 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 27.0 | 3.09e-01 | 89.4% | 61.5% |
| 4bg5B00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.53 | 36.0 | 3.11e-01 | 89.4% | 42.7% |
| 1eq1A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.52 | 38.0 | 3.47e-01 | 97.6% | 57.2% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.51 | 40.0 | 3.87e-01 | 91.1% | 73.7% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 40.0 | 3.79e-01 | 96.7% | 70.6% |
| 4kk2B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 42.0 | 3.10e-01 | 91.1% | 60.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3873445 | 5054.1.1.80 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PF29331 | 0.57 | 48.0 | 4.00e-01 | 94.3% | 82.2% |
| 3774838 | 601.4.1.57 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TMEM126 | 0.55 | 42.0 | 3.92e-01 | 92.7% | 64.5% |
| 5060191 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.54 | 39.0 | 3.33e-01 | 74.8% | 99.5% |
| 3730652 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.54 | 43.0 | 4.47e-01 | 87.8% | 96.5% |
| 3839827 | 1075.5.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ | 0.53 | 38.0 | 3.08e-01 | 73.2% | 43.5% |
| 3884008 | 5054.1.1.80 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PF29331 | 0.52 | 45.0 | 4.18e-01 | 94.3% | 100.0% |
| 3248022 | 601.1.2.80 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Yip1 | 0.52 | 41.0 | 3.68e-01 | 86.2% | 99.4% |
| 3992281 | 5054.1.1.80 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PF29331 | 0.52 | 41.0 | 3.54e-01 | 88.6% | 81.9% |
| 3579981 | 632.11.1.14 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › TMEM107 | 0.51 | 34.0 | 3.77e-01 | 82.9% | 83.0% |
| 4030151 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.51 | 42.0 | 4.08e-01 | 87.0% | 79.3% |
| 4671784 | 3755.3.1.310 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA | 0.51 | 36.0 | 3.65e-01 | 75.6% | 73.3% |
| 4950461 | 1079.1.1.5 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2 | 0.51 | 36.0 | 3.05e-01 | 73.2% | 77.6% |
| 3869337 | 150.3.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 | 0.51 | 36.0 | 2.96e-01 | 72.4% | 79.5% |
| 3808373 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.50 | 41.0 | 2.76e-01 | 87.0% | 73.8% |
| 4031691 | 5067.1.1.1 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran | 0.50 | 43.0 | 3.63e-01 | 94.3% | 76.7% |
| 4976893 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.50 | 30.0 | 3.18e-01 | 74.8% | 65.5% |
D2
high
residues 134-216
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ic8A01 | 3.40.30.110 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.65 | 47.0 | 3.60e-01 | 100.0% | 35.0% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.62 | 46.0 | 4.34e-01 | 100.0% | 64.4% |
| 1jg5A00 | 3.30.1410.10 | Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP | 0.54 | 41.0 | 4.19e-01 | 83.1% | 96.4% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 32.0 | 3.13e-01 | 94.0% | 51.6% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 39.0 | 2.94e-01 | 98.8% | 32.5% |
| 2pn1A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 38.0 | 3.41e-01 | 79.5% | 69.2% |
| 1kviA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.57e-01 | 95.2% | 74.7% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.50 | 44.0 | 3.40e-01 | 100.0% | 64.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.57 | 47.0 | 4.74e-01 | 100.0% | 89.4% |
| 3478898 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 36.0 | 3.94e-01 | 95.2% | 83.1% |
| 5042797 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.56 | 38.0 | 4.21e-01 | 100.0% | 96.7% |
| 5080798 | 4.17.1.0 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like | 0.56 | 43.0 | 4.49e-01 | 95.2% | 90.7% |
| 3725153 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.55 | 39.0 | 4.05e-01 | 98.8% | 78.8% |
| 3768347 | 4.1.1.230 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7030 | 0.55 | 40.0 | 4.38e-01 | 91.6% | 98.5% |
| 3965956 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.55 | 43.0 | 4.18e-01 | 100.0% | 77.8% |
| 5053225 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 46.0 | 4.41e-01 | 100.0% | 82.0% |
| 3708505 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 41.0 | 3.56e-01 | 85.5% | 73.3% |
| 3720023 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 41.0 | 3.94e-01 | 98.8% | 71.0% |
| 4229140 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.52 | 39.0 | 3.81e-01 | 100.0% | 73.3% |
| 4979949 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 35.0 | 3.62e-01 | 96.4% | 72.5% |
| 4978147 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 35.0 | 3.44e-01 | 96.4% | 63.3% |
| 4020093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 38.0 | 3.28e-01 | 78.3% | 67.4% |
| 4929262 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.52 | 39.0 | 3.25e-01 | 100.0% | 43.9% |
| 3581537 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 40.0 | 3.71e-01 | 85.5% | 66.7% |