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GU459069.1__ADQ53108.1__65p100__00099

Bact-Vir

GU459069.1__ADQ53108.1__65p100__00099

Identity

Accession:
GU459069 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ishigurovirus› Aeromonas_phage_65

TaxID: 2919549

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-182
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
D2 high residues 192-306
PDB
Domain cluster: rep: ON399185.1__URG18043.1__T765_00205__00199__D661-785
D3 high residues 361-455
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07880.17 best T4_gp9_10_N 56.4 5.90e-15 99.0% 56.0%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.84 80.0 7.76e-01 100.0% 92.2%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 60.0 6.22e-01 100.0% 93.3%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.68 58.0 5.96e-01 100.0% 97.8%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.67 53.0 5.63e-01 94.7% 97.6%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 49.0 4.74e-01 100.0% 72.6%
6voxA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 43.0 3.93e-01 81.1% 84.8%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 46.0 4.42e-01 90.5% 91.0%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 45.0 4.39e-01 97.9% 77.7%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.57 44.0 3.28e-01 84.2% 58.0%
2hldH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 33.0 3.52e-01 89.5% 65.5%
3eeqA01 3.40.50.11220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 3.50e-01 75.8% 77.5%
3lzdA02 3.40.50.11850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 2 0.52 37.0 3.54e-01 74.7% 84.4%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 40.0 2.84e-01 85.3% 51.9%
3bkwB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.26e-01 91.6% 88.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184462 520.1.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.84 80.0 6.42e-01 100.0% 56.5%
1070458 520.1.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.83 79.0 6.43e-01 100.0% 62.5%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.73 60.0 6.30e-01 100.0% 96.6%
4561709 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.69 58.0 6.01e-01 100.0% 96.7%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.69 59.0 6.00e-01 100.0% 96.8%
4562874 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.67 60.0 4.43e-01 100.0% 58.8%
3289663 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.66 59.0 4.55e-01 100.0% 66.4%
7233 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.65 49.0 4.72e-01 100.0% 72.0%
3964913 207.2.1.10 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.59 52.0 4.59e-01 100.0% 78.6%
4499750 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 43.0 3.20e-01 80.0% 77.7%
4254014 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.57 46.0 4.48e-01 90.5% 79.1%
4510460 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.56 45.0 4.33e-01 98.9% 75.7%
3839291 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.51 45.0 3.34e-01 98.9% 75.6%
4927134 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.51 43.0 3.71e-01 94.7% 75.5%
D4 medium residues 469-524_647-687
PDB
Domain cluster: rep: MH791414.1__QAY01300.1__ASwh1_237__00232__D156-214_334-360
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23618.1 best T4_gp9_10_C 25.6 1.80e-05 48.4% 37.3%
D5 medium residues 525-646
PDB
Domain cluster: rep: MH791414.1__QAY01300.1__ASwh1_237__00232__D215-333
D6 medium residues 688-828
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22670.2 best Gp10_D3 167.1 2.80e-49 87.2% 95.9%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 34.0 4.37e-01 78.7% 91.0%
1cczA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 4.35e-01 79.4% 88.2%
1fhgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 3.95e-01 80.1% 74.5%
1ej6A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 36.0 4.21e-01 83.0% 87.4%
4nn5C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 30.0 3.69e-01 82.3% 78.6%
1hxmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 4.14e-01 90.8% 78.5%
3v8oA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 31.0 3.56e-01 80.1% 72.2%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.63e-01 83.0% 78.9%
1v05A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 30.0 3.50e-01 79.4% 76.0%
3vsvA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 40.0 4.19e-01 77.3% 97.7%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 32.0 3.53e-01 73.0% 77.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1839972 3386.2.1.2 ↗ beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 › Gp10_D3 0.74 61.0 6.17e-01 87.9% 87.8%
5055757 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 33.0 4.49e-01 78.7% 85.3%
3261441 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.70 31.0 4.41e-01 73.0% 89.2%
5062645 11.1.1.171 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.68 35.0 4.58e-01 78.7% 90.7%
5083832 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 36.0 4.42e-01 80.9% 80.0%
4883021 11.1.1.171 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.63 33.0 4.42e-01 78.0% 98.6%
5033165 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 35.0 4.31e-01 79.4% 87.8%
4880698 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.61 30.0 3.96e-01 72.3% 88.9%
1137620 11.1.1.302 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Reovirus_L2_6th 0.60 36.0 4.15e-01 83.0% 83.8%
3488074 11.1.1.847 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Unc5_NetrinR_N 0.59 40.0 4.12e-01 83.0% 72.6%
1395594 11.1.1.250 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_10 0.58 36.0 4.29e-01 87.9% 91.6%
3273353 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.57 31.0 3.82e-01 80.1% 84.7%
3703829 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.98e-01 89.4% 71.9%
3879235 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 38.0 4.33e-01 83.7% 93.3%
4930890 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 31.0 3.98e-01 83.7% 100.0%
3406137 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 35.0 3.74e-01 80.1% 71.8%
3881005 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.95e-01 83.0% 84.5%
5039307 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 34.0 4.02e-01 90.1% 96.7%
3884042 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 36.0 4.10e-01 82.3% 92.2%
4942630 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 4.00e-01 82.3% 90.0%
3900074 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 3.87e-01 78.7% 84.8%
3618777 11.1.1.842 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.53 34.0 3.77e-01 80.9% 83.5%
5049496 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 40.0 4.00e-01 88.7% 77.9%
3482950 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 36.0 3.71e-01 100.0% 77.0%
4982451 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 31.0 3.56e-01 80.1% 86.0%
D7 medium residues 855-904
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21939.2 best Gp10_C 51.4 3.00e-13 66.0% 23.2%
D8 medium residues 947-1030
PDB
Domain cluster: rep: KY000080.1__APD20556.1__X__00200__D304-330_348-383
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21939.2 best Gp10_C 64.9 2.10e-17 92.9% 53.6%