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GU557055.1__ADW08414.1__phage1322_36__00036

Bact-Vir

GU557055.1__ADW08414.1__phage1322_36__00036

Identity

Accession:
GU557055 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Puniceispirillum_phage_HMO-2011

TaxID: 948071

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-27_48-96
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 48.0 3.18e-01 97.3% 85.7%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.54 43.0 3.51e-01 91.8% 91.4%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.53 38.0 3.99e-01 89.0% 86.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3487398 626.1.1.1 ↗ alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.50 38.0 2.44e-01 84.9% 43.3%
D2 medium residues 28-47_97-157
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 31.0 3.55e-01 74.1% 70.2%
4j2gA00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.52 40.0 3.08e-01 84.0% 52.0%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 40.0 3.79e-01 98.8% 71.6%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 33.0 3.57e-01 70.4% 81.5%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 39.0 3.79e-01 84.0% 93.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389034 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 36.0 4.14e-01 82.7% 89.1%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.57 38.0 3.99e-01 70.4% 100.0%
3941016 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 42.0 3.58e-01 80.2% 55.6%
4141823 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.54 42.0 3.59e-01 84.0% 66.9%
4381172 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.53 41.0 3.52e-01 84.0% 67.2%
4436971 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.53 41.0 3.37e-01 82.7% 62.8%
3491836 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 36.0 3.83e-01 71.6% 95.7%
4468258 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.51 38.0 3.69e-01 81.5% 86.3%