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GU580940.1__ADD80787.1__ReqiDocB7gene001__00001
Bact-VirGU580940.1__ADD80787.1__ReqiDocB7gene001__00001
Identity
- Accession:
- GU580940 ↗
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-186
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jgiB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.70 | 39.0 | 4.52e-01 | 87.0% | 74.6% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.66 | 61.0 | 4.64e-01 | 100.0% | 61.7% |
| 1q6oB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 61.0 | 5.68e-01 | 100.0% | 86.5% |
| 3mcnB02 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.65 | 60.0 | 5.42e-01 | 100.0% | 96.2% |
| 1p2fA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 34.0 | 4.09e-01 | 86.4% | 74.8% |
| 1tqxA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 60.0 | 5.52e-01 | 100.0% | 87.8% |
| 3drnB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 31.0 | 3.37e-01 | 98.9% | 54.0% |
| 8bc3B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 59.0 | 5.51e-01 | 100.0% | 87.4% |
| 1f05A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 58.0 | 4.73e-01 | 100.0% | 72.4% |
| 6arhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 58.0 | 4.82e-01 | 100.0% | 69.7% |
| 2yr1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 58.0 | 5.08e-01 | 100.0% | 81.3% |
| 2ekcB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 58.0 | 5.06e-01 | 100.0% | 82.5% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 37.0 | 4.20e-01 | 87.0% | 78.9% |
| 3uyiA01 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.61 | 56.0 | 4.68e-01 | 100.0% | 80.1% |
| 1f6kC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 57.0 | 4.78e-01 | 100.0% | 68.1% |
| 2q02A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.61 | 56.0 | 4.82e-01 | 100.0% | 87.1% |
| 4acyA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 55.0 | 4.46e-01 | 100.0% | 83.3% |
| 2b81C00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.60 | 54.0 | 4.46e-01 | 98.3% | 95.3% |
| 1lucB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.60 | 55.0 | 4.51e-01 | 100.0% | 92.5% |
| 4gx0B04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 36.0 | 4.16e-01 | 86.4% | 80.9% |
| 1e5dA01 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.59 | 37.0 | 4.04e-01 | 87.0% | 75.5% |
| 3no3A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.59 | 55.0 | 4.93e-01 | 100.0% | 91.6% |
| 1wzaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 53.0 | 4.28e-01 | 99.4% | 77.9% |
| 6hq7B02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.57 | 52.0 | 4.56e-01 | 97.7% | 85.4% |
| 3sy8C02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.57 | 52.0 | 4.59e-01 | 97.7% | 84.9% |
| 6gn6A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 51.0 | 4.17e-01 | 97.2% | 75.6% |
| 3kp1A04 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.57 | 41.0 | 4.41e-01 | 90.4% | 86.7% |
| 3cjpA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 51.0 | 4.52e-01 | 100.0% | 85.1% |
| 2basB01 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.55 | 50.0 | 4.58e-01 | 96.6% | 92.9% |
| 4q6jB00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.55 | 49.0 | 4.39e-01 | 97.2% | 84.2% |
| 1reqA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.55 | 41.0 | 4.27e-01 | 81.4% | 84.1% |
| 2d0oB00 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.53 | 30.0 | 3.80e-01 | 92.1% | 90.7% |
| 3pnuA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 48.0 | 3.92e-01 | 100.0% | 92.3% |
| 2vy9A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.52 | 32.0 | 3.83e-01 | 95.5% | 93.0% |
| 6qelJ01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 4.24e-01 | 86.4% | 91.6% |
| 7mjzA01 | 3.40.50.12160 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylthiotransferase, N-terminal domain | 0.51 | 32.0 | 3.70e-01 | 85.9% | 88.5% |
| 2cvhA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 4.02e-01 | 100.0% | 74.8% |
| 2j48A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 32.0 | 3.79e-01 | 98.9% | 93.3% |
| 2qxyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 32.0 | 3.79e-01 | 98.9% | 94.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999083 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.73 | 40.0 | 4.41e-01 | 87.0% | 65.3% |
| 4930751 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.71 | 39.0 | 4.49e-01 | 87.0% | 72.7% |
| 5029302 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.64 | 35.0 | 3.48e-01 | 76.8% | 50.0% |
| 1126487 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.64 | 60.0 | 5.50e-01 | 100.0% | 86.7% |
| 3594853 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.64 | 60.0 | 5.21e-01 | 100.0% | 75.4% |
| 3513877 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.64 | 60.0 | 5.44e-01 | 100.0% | 83.0% |
| 3628928 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.63 | 59.0 | 5.36e-01 | 100.0% | 83.9% |
| 4220729 | 2002.1.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM | 0.63 | 58.0 | 4.95e-01 | 100.0% | 91.4% |
| 3980529 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.62 | 57.0 | 5.42e-01 | 100.0% | 90.0% |
| 3945272 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.61 | 56.0 | 4.77e-01 | 100.0% | 70.2% |
| 5083985 | 2002.1.1.63 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 | 0.61 | 54.0 | 4.27e-01 | 97.7% | 81.6% |
| 3602513 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.60 | 55.0 | 4.40e-01 | 100.0% | 79.9% |
| 5024328 | 2002.1.1.52 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 | 0.60 | 55.0 | 4.53e-01 | 100.0% | 76.2% |
| 5015859 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.59 | 54.0 | 4.47e-01 | 100.0% | 79.4% |
| 5030908 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.57 | 52.0 | 4.37e-01 | 98.9% | 91.9% |
| 3254129 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 38.0 | 4.05e-01 | 97.2% | 79.3% |
| 5044224 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 51.0 | 4.34e-01 | 100.0% | 93.3% |
| 3431930 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.56 | 40.0 | 4.15e-01 | 86.4% | 78.2% |
| 3418569 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.55 | 38.0 | 3.97e-01 | 70.1% | 85.5% |
| 4944216 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.55 | 38.0 | 4.14e-01 | 70.1% | 98.6% |
| 4937665 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.54 | 34.0 | 4.04e-01 | 86.4% | 93.9% |
| 4215948 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.54 | 31.0 | 3.64e-01 | 84.7% | 80.0% |
| 5036751 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.54 | 37.0 | 4.11e-01 | 70.1% | 97.2% |
| 4988180 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.53 | 47.0 | 4.14e-01 | 98.3% | 95.9% |
| 3943513 | 2484.1.1.74 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF | 0.53 | 30.0 | 3.26e-01 | 92.7% | 63.3% |
| 4396205 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.53 | 33.0 | 3.71e-01 | 87.0% | 79.3% |
| 3390373 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.53 | 44.0 | 3.56e-01 | 87.6% | 55.4% |
| 3939043 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.53 | 39.0 | 3.69e-01 | 87.0% | 62.7% |
| 5065153 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.53 | 47.0 | 4.19e-01 | 100.0% | 75.8% |
| 3294125 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.52 | 41.0 | 4.26e-01 | 92.1% | 87.1% |
| 4500970 | 2007.1.2.42 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › PF29770 | 0.52 | 39.0 | 3.90e-01 | 86.4% | 75.1% |
| 3274548 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.52 | 36.0 | 3.60e-01 | 87.0% | 68.1% |
| 3535667 | 2003.1.1.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK | 0.52 | 37.0 | 3.80e-01 | 86.4% | 77.6% |
| 3173047 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 47.0 | 3.83e-01 | 100.0% | 77.9% |
| 163644 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.51 | 32.0 | 3.79e-01 | 98.9% | 93.3% |
| 4942058 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.50 | 44.0 | 3.37e-01 | 97.7% | 97.1% |
| 4945261 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.50 | 33.0 | 3.82e-01 | 95.5% | 90.0% |
D2
medium
residues 190-249
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lruA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 37.0 | 3.21e-01 | 73.3% | 78.6% |
| 4xrpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 39.0 | 3.02e-01 | 81.7% | 44.6% |