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GU580940.1__ADD80859.1__ReqiDocB7gene073__00073

Bact-Vir

GU580940.1__ADD80859.1__ReqiDocB7gene073__00073

Identity

Accession:
GU580940 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-71
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.69 54.0 4.73e-01 89.9% 57.3%
1vgyA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.66 53.0 3.62e-01 89.9% 96.2%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 55.0 3.63e-01 94.2% 60.7%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 52.0 4.62e-01 88.4% 69.1%
3cwvA02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.63 43.0 3.40e-01 72.5% 67.5%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.63 52.0 4.14e-01 94.2% 65.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 48.0 3.75e-01 81.2% 73.2%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 50.0 3.41e-01 91.3% 50.5%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 40.0 3.65e-01 72.5% 47.9%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 3.15e-01 89.9% 28.7%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 51.0 4.07e-01 89.9% 95.5%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.58e-01 97.1% 87.0%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 4.08e-01 89.9% 81.7%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 50.0 4.44e-01 98.6% 65.3%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 53.0 5.01e-01 98.6% 91.7%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 3.88e-01 89.9% 93.5%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 3.98e-01 89.9% 96.9%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 40.0 3.68e-01 84.1% 52.7%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.58 50.0 3.83e-01 97.1% 41.9%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 44.0 3.93e-01 98.6% 58.2%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.57 51.0 3.62e-01 98.6% 36.2%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.86e-01 89.9% 97.6%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 31.0 2.75e-01 72.5% 36.6%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.82e-01 89.9% 96.9%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 34.0 2.72e-01 98.6% 28.5%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 50.0 4.40e-01 98.6% 89.2%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 46.0 2.81e-01 94.2% 31.2%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.35e-01 97.1% 36.6%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 4.32e-01 98.6% 86.1%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 49.0 3.87e-01 97.1% 61.5%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.71e-01 100.0% 47.3%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 41.0 2.67e-01 79.7% 60.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 42.0 3.49e-01 81.2% 64.2%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 42.0 3.07e-01 88.4% 42.9%
3b5hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.47e-01 97.1% 85.4%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 42.0 3.12e-01 84.1% 72.2%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 45.0 3.81e-01 95.7% 82.0%
3c8mA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 45.0 3.62e-01 100.0% 55.2%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 35.0 3.91e-01 73.9% 90.2%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 40.0 2.70e-01 81.2% 32.3%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 47.0 3.72e-01 100.0% 64.4%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.26e-01 98.6% 86.5%
5do8B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 37.0 3.61e-01 73.9% 92.2%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.32e-01 98.6% 41.3%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.69e-01 88.4% 64.3%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 3.04e-01 81.2% 51.4%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.51 41.0 3.46e-01 89.9% 77.1%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.83e-01 88.4% 81.0%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 38.0 3.67e-01 79.7% 96.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1680012 3425.2.1.0 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain 0.72 52.0 3.34e-01 84.1% 15.6%
3502994 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 48.0 3.85e-01 100.0% 37.7%
4992459 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.70 42.0 4.19e-01 78.3% 60.0%
3953894 7579.1.1.41 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase_PHB 0.69 44.0 2.93e-01 76.8% 16.9%
3952545 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 42.0 4.09e-01 82.6% 54.4%
4937788 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 44.0 4.83e-01 79.7% 81.8%
185709 3389.1.1.1 a+b two layers › hypothetical protein SAV0303 › hypothetical protein SAV0303 › hypothetical protein SAV0303 › DUF4467 0.65 51.0 4.57e-01 85.5% 68.8%
3782734 59.1.1.11 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 0.64 47.0 3.37e-01 78.3% 49.3%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.63 46.0 3.96e-01 78.3% 65.5%
4964457 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 45.0 3.73e-01 98.6% 42.4%
3856612 319.1.1.9 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DPCD 0.63 43.0 3.14e-01 97.1% 26.5%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 43.0 3.72e-01 71.0% 46.7%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.62 45.0 3.87e-01 76.8% 73.6%
3390786 244.2.1.12 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › CFAP61_dimer 0.62 46.0 4.04e-01 97.1% 52.4%
3978651 241.13.1.1 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif 0.62 42.0 3.70e-01 71.0% 51.4%
3962048 227.1.1.15 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 0.62 46.0 4.13e-01 88.4% 56.0%
3716610 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 43.0 3.76e-01 72.5% 50.0%
3567156 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 48.0 3.37e-01 88.4% 68.0%
3496967 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.48e-01 84.1% 38.6%
5058653 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 3.56e-01 76.8% 84.2%
5010025 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 45.0 3.72e-01 100.0% 47.5%
5028178 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.58 50.0 3.66e-01 100.0% 57.1%
1318715 243.16.1.1 a+b two layers › Cystatin-like › hypothetical protein CLOLEP_02462 › hypothetical protein CLOLEP_02462 › DUF6836 0.57 46.0 3.95e-01 89.9% 80.7%
4354451 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.57 41.0 3.44e-01 76.8% 70.4%
4024012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.34e-01 94.2% 30.8%
3990957 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 46.0 3.72e-01 89.9% 91.1%
3767960 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 49.0 4.04e-01 97.1% 74.4%
4444757 59.1.1.11 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 0.56 40.0 3.16e-01 78.3% 81.9%
3965943 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.55 43.0 3.11e-01 82.6% 68.9%
5036758 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 45.0 2.99e-01 89.9% 26.4%
5034804 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.55 48.0 3.41e-01 97.1% 34.6%
3216049 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.55 42.0 3.09e-01 88.4% 31.7%
3874075 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 48.0 4.35e-01 97.1% 84.9%
4309203 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.54 43.0 3.16e-01 84.1% 74.4%
3709691 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 48.0 3.72e-01 100.0% 91.9%
3585491 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 45.0 2.74e-01 89.9% 17.8%
4419661 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 38.0 3.96e-01 72.5% 98.5%
3308699 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.54 42.0 3.66e-01 87.0% 80.9%
3313558 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.54 41.0 3.65e-01 87.0% 80.9%
4015358 7579.1.1.49 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.54 43.0 2.80e-01 89.9% 55.8%
4477197 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.54 42.0 2.73e-01 84.1% 43.9%
5040002 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 38.0 3.23e-01 75.4% 80.0%
4182548 244.4.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.52 35.0 3.26e-01 71.0% 84.2%
3740580 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 2.92e-01 81.2% 54.9%
5033617 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.06e-01 76.8% 64.8%
3987919 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.51 45.0 3.89e-01 98.6% 70.0%
3929357 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 37.0 3.49e-01 76.8% 64.3%
4530660 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 44.0 3.53e-01 98.6% 46.9%
4926836 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.13e-01 78.3% 100.0%
5000153 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.51 37.0 3.46e-01 75.4% 75.9%
3952652 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.51 46.0 2.99e-01 100.0% 29.7%
4344263 2004.1.1.361 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UTP25_NTPase-like 0.51 45.0 2.82e-01 100.0% 68.7%
4679943 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.50 43.0 3.33e-01 98.6% 58.8%
3225336 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 45.0 3.54e-01 100.0% 67.6%