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GU580943.1__ADD81117.1__ReqiPine5gene12__00012

Bact-Vir

GU580943.1__ADD81117.1__ReqiPine5gene12__00012

Identity

Accession:
GU580943 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Reqipinevirus› Rhodococcus_phage_ReqiPine5

TaxID: 691963

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-240
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.75 34.0 4.03e-01 76.2% 59.6%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.72 35.0 3.91e-01 82.6% 57.1%
3godB02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.60 32.0 3.44e-01 77.9% 56.2%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.59 35.0 4.21e-01 89.8% 88.6%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 30.0 3.73e-01 95.3% 83.8%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.55 24.0 3.23e-01 72.8% 72.7%
3lmoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 22.0 3.42e-01 91.1% 90.4%
3uonA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 34.0 3.21e-01 84.3% 51.6%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 24.0 3.17e-01 96.6% 75.9%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.51 28.0 3.53e-01 85.1% 88.9%
2nwlC00 1.10.3860.10 Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter 0.51 35.0 2.94e-01 95.7% 40.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3165030 601.19.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.69 55.0 5.95e-01 100.0% 99.0%
4026473 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.64 42.0 4.95e-01 89.4% 93.8%
3696450 601.19.1.21 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF7605 0.61 47.0 5.17e-01 94.5% 96.4%
3514731 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.57 46.0 3.69e-01 84.7% 90.8%
3537848 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 31.0 2.92e-01 71.5% 40.0%
3251869 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.56 22.0 2.33e-01 90.6% 38.1%
4663047 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 24.0 2.49e-01 99.6% 41.3%
5039336 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.55 41.0 4.10e-01 97.0% 73.5%
3281126 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.54 47.0 4.48e-01 100.0% 80.0%
4950911 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 25.0 3.13e-01 86.0% 69.0%
4579149 1075.1.1.40 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › PF30101 0.53 38.0 3.81e-01 97.0% 71.7%
4951633 1075.1.2.42 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › ABC2_membrane_2 0.52 39.0 3.92e-01 97.0% 74.6%
5079706 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.52 34.0 3.55e-01 95.3% 69.3%
4953929 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.51 34.0 3.46e-01 93.6% 65.7%
4246487 5045.1.1.1 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.51 37.0 3.77e-01 95.3% 75.2%
3966658 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.51 37.0 3.81e-01 96.2% 78.2%
5075297 1075.5.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt 0.50 33.0 3.39e-01 94.9% 66.8%
4972366 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.50 32.0 3.50e-01 92.3% 73.5%
D2 high residues 257-358
PDB
Domain cluster: representative
D3 high residues 377-539
PDB
Domain cluster: rep: MN908685.1__QIG57821.1__SEA_PAULODIABOLI_87__00087__D793-884_909-936
D4 high residues 561-712
PDB
Domain cluster: rep: OR521081.1__WNO27886.1__SEA_HALO3_17__00017__D18-170