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GU580943.1__ADD81176.1__ReqiPine5gene71__00071

Bact-Vir

GU580943.1__ADD81176.1__ReqiPine5gene71__00071

Identity

Accession:
GU580943 ↗
Kingdom:
phage

Quality

47.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Reqipinevirus› Rhodococcus_phage_ReqiPine5

TaxID: 691963

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-67_79-109
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 70.0 5.01e-01 100.0% 35.9%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 72.0 5.34e-01 100.0% 43.4%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 71.0 4.99e-01 100.0% 36.7%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.76 65.0 4.73e-01 100.0% 35.1%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.75 68.0 4.82e-01 100.0% 52.5%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 41.0 3.26e-01 100.0% 28.0%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 45.0 3.79e-01 100.0% 40.4%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.68 40.0 3.02e-01 100.0% 24.7%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.66 42.0 4.72e-01 98.4% 89.1%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 49.0 4.52e-01 88.9% 98.8%
3gqsB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 50.0 4.30e-01 92.1% 96.0%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.60 50.0 5.07e-01 98.4% 91.9%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.35e-01 98.4% 77.3%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 3.27e-01 100.0% 42.1%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.42e-01 100.0% 47.7%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 40.0 3.85e-01 100.0% 62.2%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 47.0 4.68e-01 98.4% 90.6%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 37.0 2.74e-01 100.0% 26.2%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 45.0 4.37e-01 98.4% 80.6%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 43.0 3.74e-01 88.9% 91.6%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 43.0 3.67e-01 85.7% 84.8%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.84e-01 100.0% 71.2%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.40e-01 100.0% 40.1%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.28e-01 100.0% 46.9%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 40.0 4.07e-01 79.4% 83.9%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 3.56e-01 85.7% 76.0%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 43.0 4.51e-01 96.8% 100.0%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 45.0 3.97e-01 100.0% 95.9%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 41.0 2.86e-01 100.0% 26.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.03e-01 100.0% 87.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.72e-01 79.4% 98.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 35.0 2.92e-01 71.4% 96.7%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 45.0 3.35e-01 100.0% 68.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.56e-01 100.0% 63.7%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 35.0 3.17e-01 98.4% 51.1%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.20e-01 100.0% 45.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023539 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 70.0 5.13e-01 100.0% 35.5%
5028312 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 68.0 5.13e-01 100.0% 37.9%
5078549 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 72.0 5.19e-01 100.0% 36.3%
4170121 69.1.1.11 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.83 70.0 4.98e-01 100.0% 33.5%
3963364 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.83 68.0 5.12e-01 100.0% 38.6%
4984220 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 71.0 5.22e-01 100.0% 38.1%
4940451 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 70.0 5.33e-01 100.0% 43.0%
5030213 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 70.0 5.21e-01 100.0% 40.7%
3603291 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 67.0 4.75e-01 100.0% 33.1%
4600944 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 72.0 5.07e-01 100.0% 36.0%
4487998 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.78 72.0 5.07e-01 100.0% 36.0%
4070999 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.77 71.0 5.20e-01 100.0% 40.6%
164902 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 65.0 4.64e-01 100.0% 32.8%
4934481 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 68.0 5.12e-01 100.0% 50.0%
3949431 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 68.0 5.07e-01 100.0% 43.3%
2524072 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 68.0 4.85e-01 100.0% 37.1%
5035476 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.73 66.0 4.87e-01 100.0% 49.4%
5066163 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 66.0 5.00e-01 100.0% 46.4%
2546507 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.69 62.0 4.73e-01 100.0% 47.6%
3969508 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 45.0 3.27e-01 100.0% 30.6%
4952076 1.10.1.1 ↗ beta barrels › cradle loop barrel › HI0933 barrel domain-like › HI0933 barrel domain-like › HI0933_like_1st 0.57 51.0 4.53e-01 100.0% 87.8%
3611087 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.56 47.0 4.00e-01 100.0% 98.3%
4018366 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.56 36.0 3.29e-01 100.0% 48.2%
5030093 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.54 39.0 3.81e-01 81.0% 98.7%
3544069 10.4.1.28 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF27640 0.53 37.0 3.07e-01 74.6% 97.6%
4429923 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.50 42.0 3.65e-01 100.0% 61.9%
D2 medium residues 1-34_111-238
PDB