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GU936714.1__ADF42434.1__S-CBS2_gp078__00078
Bact-VirGU936714.1__ADF42434.1__S-CBS2_gp078__00078
Identity
- Accession:
- GU936714 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 335-401
Domain cluster:
representative
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dd9A03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.84 | 67.0 | 7.09e-01 | 95.5% | 98.3% |
| 4edgA03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.84 | 69.0 | 7.30e-01 | 100.0% | 100.0% |
| 2vtyA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.83 | 66.0 | 5.04e-01 | 85.1% | 40.3% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.77 | 57.0 | 4.54e-01 | 79.1% | 77.4% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.77 | 59.0 | 6.36e-01 | 100.0% | 98.2% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.73 | 51.0 | 4.70e-01 | 73.1% | 73.3% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.72 | 55.0 | 4.89e-01 | 82.1% | 85.6% |
| 2r17C00 | 1.25.40.660 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C | 0.72 | 63.0 | 4.14e-01 | 100.0% | 26.2% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.71 | 52.0 | 4.52e-01 | 79.1% | 76.6% |
| 2rpaA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 56.0 | 5.36e-01 | 85.1% | 81.8% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.71 | 55.0 | 4.61e-01 | 85.1% | 60.3% |
| 1f7cA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.70 | 59.0 | 4.45e-01 | 100.0% | 60.4% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 53.0 | 4.71e-01 | 85.1% | 67.0% |
| 4uurA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 51.0 | 4.20e-01 | 80.6% | 88.7% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.68 | 52.0 | 4.31e-01 | 85.1% | 53.2% |
| 7ocsB01 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.67 | 57.0 | 4.36e-01 | 100.0% | 42.2% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.67 | 51.0 | 4.72e-01 | 82.1% | 65.9% |
| 2ee4A01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.67 | 48.0 | 3.46e-01 | 76.1% | 52.1% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 59.0 | 4.49e-01 | 100.0% | 44.2% |
| 3gwlA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.66 | 50.0 | 4.34e-01 | 82.1% | 65.1% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 56.0 | 3.79e-01 | 100.0% | 32.9% |
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.66 | 56.0 | 4.06e-01 | 92.5% | 63.9% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 45.0 | 3.96e-01 | 71.6% | 57.4% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 48.0 | 3.89e-01 | 80.6% | 59.7% |
| 1j3eA00 | 1.20.1380.10 | Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain | 0.65 | 47.0 | 3.92e-01 | 76.1% | 98.3% |
| 3ebbA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 56.0 | 3.81e-01 | 100.0% | 42.4% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 45.0 | 4.29e-01 | 74.6% | 62.8% |
| 3i5pA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.64 | 46.0 | 4.63e-01 | 100.0% | 74.3% |
| 2pl2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 52.0 | 3.82e-01 | 98.5% | 32.5% |
| 7wu8B01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.63 | 54.0 | 5.21e-01 | 100.0% | 87.3% |
| 2py6A01 | 1.20.1270.160 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 42.0 | 4.09e-01 | 73.1% | 60.3% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 47.0 | 4.52e-01 | 82.1% | 78.5% |
| 1xioA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 46.0 | 3.26e-01 | 79.1% | 76.5% |
| 3b34A05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.63 | 54.0 | 3.49e-01 | 100.0% | 22.5% |
| 3cskA02 | 3.30.540.30 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.62 | 47.0 | 3.59e-01 | 82.1% | 54.9% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 44.0 | 4.20e-01 | 76.1% | 73.4% |
| 1ciyA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.62 | 52.0 | 3.74e-01 | 100.0% | 51.6% |
| 3hhsA01 | 1.20.1370.10 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain | 0.62 | 54.0 | 4.23e-01 | 100.0% | 54.5% |
| 7qx4A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.61 | 51.0 | 3.65e-01 | 100.0% | 45.7% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.60 | 45.0 | 3.70e-01 | 83.6% | 57.0% |
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 51.0 | 4.29e-01 | 98.5% | 86.6% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 44.0 | 3.81e-01 | 80.6% | 78.2% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.59 | 46.0 | 3.39e-01 | 85.1% | 92.7% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.57 | 47.0 | 4.09e-01 | 92.5% | 64.8% |
| 3onkA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 47.0 | 3.86e-01 | 98.5% | 59.9% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 41.0 | 2.86e-01 | 79.1% | 76.7% |
| 4n5cD06 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 46.0 | 3.97e-01 | 94.0% | 57.5% |
| 6humG01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.55 | 43.0 | 3.27e-01 | 85.1% | 40.6% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 45.0 | 3.45e-01 | 95.5% | 70.3% |
| 2ii2A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.53 | 45.0 | 4.34e-01 | 100.0% | 98.7% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.52 | 38.0 | 3.61e-01 | 82.1% | 84.9% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4391271 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.92 | 86.0 | 8.52e-01 | 100.0% | 97.1% |
| 4634677 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.89 | 80.0 | 7.93e-01 | 97.0% | 94.3% |
| 4226347 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.88 | 72.0 | 7.60e-01 | 97.0% | 98.3% |
| 4347813 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.86 | 76.0 | 7.71e-01 | 100.0% | 96.9% |
| 3963104 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.83 | 70.0 | 6.28e-01 | 100.0% | 67.8% |
| 3982137 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.82 | 69.0 | 6.84e-01 | 100.0% | 87.1% |
| 4615627 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.81 | 71.0 | 6.81e-01 | 100.0% | 84.0% |
| 4093017 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.81 | 67.0 | 6.43e-01 | 100.0% | 80.0% |
| 3988631 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.80 | 69.0 | 6.65e-01 | 100.0% | 84.0% |
| 2168119 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.80 | 62.0 | 6.60e-01 | 86.6% | 98.2% |
| 3554694 | 109.4.1.1503 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rod_C | 0.78 | 69.0 | 4.74e-01 | 100.0% | 34.3% |
| 4623142 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.77 | 64.0 | 6.72e-01 | 95.5% | 100.0% |
| 2056101 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.74 | 62.0 | 6.27e-01 | 100.0% | 93.8% |
| 4507511 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.74 | 64.0 | 4.57e-01 | 100.0% | 33.7% |
| 4436102 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 51.0 | 5.33e-01 | 77.6% | 81.7% |
| 4251816 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.73 | 63.0 | 6.40e-01 | 98.5% | 96.9% |
| 4177735 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.73 | 63.0 | 6.41e-01 | 100.0% | 100.0% |
| 3522359 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.71 | 48.0 | 5.20e-01 | 70.1% | 87.3% |
| 3657912 | 109.4.1.1129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRAPPC9-Trs120 | 0.70 | 61.0 | 4.26e-01 | 100.0% | 30.0% |
| 3717748 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 61.0 | 4.10e-01 | 100.0% | 92.2% |
| 3751351 | 3796.1.1.0 ↗ | alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain | 0.69 | 47.0 | 4.83e-01 | 71.6% | 75.4% |
| 3817383 | 109.4.1.401 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NRDE-2 | 0.68 | 60.0 | 5.05e-01 | 100.0% | 70.4% |
| 3902495 | 603.1.1.23 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Sec20 | 0.68 | 59.0 | 4.17e-01 | 100.0% | 76.8% |
| 5020587 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.68 | 58.0 | 3.95e-01 | 98.5% | 35.8% |
| 143217 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 50.0 | 4.48e-01 | 80.6% | 75.5% |
| 3172637 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.67 | 57.0 | 5.53e-01 | 92.5% | 84.0% |
| 3454543 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.67 | 59.0 | 3.78e-01 | 100.0% | 24.4% |
| 3262571 | 60.1.2.6 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Beta-barrel_INTS6 | 0.66 | 56.0 | 3.74e-01 | 100.0% | 22.7% |
| 5044421 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.66 | 49.0 | 4.70e-01 | 83.6% | 68.8% |
| 4970531 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.65 | 55.0 | 3.47e-01 | 92.5% | 37.6% |
| 5077120 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.65 | 57.0 | 3.92e-01 | 100.0% | 36.6% |
| 3784519 | 109.4.1.933 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Trm732 | 0.63 | 55.0 | 3.47e-01 | 100.0% | 19.2% |
| 3264136 | 3444.1.1.0 ↗ | alpha arrays › DP domain › DP domain › DP domain | 0.63 | 46.0 | 4.20e-01 | 74.6% | 58.8% |
| 3708428 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 53.0 | 3.90e-01 | 95.5% | 58.9% |
| 3504901 | 109.4.1.1581 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29127 | 0.63 | 53.0 | 4.48e-01 | 98.5% | 63.3% |
| 3990257 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 54.0 | 4.55e-01 | 100.0% | 60.0% |
| 3479969 | 109.4.1.584 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fis1_TPR_C | 0.62 | 52.0 | 4.25e-01 | 98.5% | 48.9% |
| 3458514 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.62 | 52.0 | 3.46e-01 | 100.0% | 28.4% |
| 3203609 | 109.26.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Vps16_C | 0.61 | 52.0 | 3.85e-01 | 95.5% | 36.1% |
| 4997481 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.61 | 46.0 | 4.05e-01 | 85.1% | 54.0% |
| 3807400 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 47.0 | 4.03e-01 | 86.6% | 86.1% |
| 3864006 | 109.4.1.910 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_C | 0.61 | 52.0 | 3.17e-01 | 100.0% | 22.9% |
| 3250607 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.61 | 49.0 | 3.87e-01 | 95.5% | 58.7% |
| 4588555 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 51.0 | 3.69e-01 | 100.0% | 34.1% |
| 2392400 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 50.0 | 3.60e-01 | 100.0% | 48.1% |
| 4945549 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.59 | 42.0 | 3.01e-01 | 79.1% | 22.1% |
| 3725670 | 627.1.1.0 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain | 0.59 | 51.0 | 4.02e-01 | 98.5% | 71.0% |
| 3611198 | 109.4.1.1234 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DNAAF5 | 0.58 | 50.0 | 3.35e-01 | 100.0% | 26.6% |
| None | — | 0.57 | 44.0 | 3.01e-01 | 98.5% | 21.1% | |
| 3169759 | 109.4.1.180 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_HEAT,Nipped-B_C | 0.57 | 48.0 | 2.68e-01 | 100.0% | 6.8% |
| 3257468 | 109.4.1.264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 | 0.57 | 49.0 | 3.48e-01 | 100.0% | 35.5% |
| 4510293 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.57 | 51.0 | 4.70e-01 | 100.0% | 85.9% |
| 3711644 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 4.14e-01 | 100.0% | 62.5% |
| 4028200 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 45.0 | 2.96e-01 | 92.5% | 70.7% |
| 4563088 | 109.2.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth | 0.53 | 45.0 | 3.20e-01 | 97.0% | 34.1% |
D2
high
residues 416-516
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r6aC01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.85 | 74.0 | 7.62e-01 | 96.0% | 97.9% |
| 6qelA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.78 | 71.0 | 6.13e-01 | 100.0% | 66.2% |
| 4im9B00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.70 | 59.0 | 5.41e-01 | 97.0% | 69.6% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.68 | 47.0 | 4.53e-01 | 71.3% | 97.3% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.60 | 43.0 | 4.20e-01 | 75.2% | 86.7% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.56 | 43.0 | 3.94e-01 | 86.1% | 91.6% |
| 1dvgA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.56 | 39.0 | 3.12e-01 | 74.3% | 79.9% |
| 1wwmA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.55 | 38.0 | 3.20e-01 | 72.3% | 86.7% |
| 1a5tA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 38.0 | 3.70e-01 | 73.3% | 84.5% |
| 2pejA00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.54 | 35.0 | 3.50e-01 | 71.3% | 62.4% |
| 4jzaA03 | 1.20.120.1720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 38.0 | 3.37e-01 | 74.3% | 57.5% |
| 2znmD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 47.0 | 3.91e-01 | 100.0% | 67.9% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.53 | 36.0 | 3.17e-01 | 70.3% | 62.3% |
| 1fntc01 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.53 | 38.0 | 3.19e-01 | 77.2% | 88.8% |
| 4bmoA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.52 | 41.0 | 3.05e-01 | 86.1% | 82.8% |
| 1xvhB00 | 1.20.120.1850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) | 0.52 | 29.0 | 2.75e-01 | 88.1% | 44.1% |
| 3sp1A02 | 1.20.120.1910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain | 0.51 | 36.0 | 3.17e-01 | 84.2% | 49.0% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 38.0 | 3.32e-01 | 80.2% | 84.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4137062 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.84 | 76.0 | 6.76e-01 | 99.0% | 70.5% |
| 3056106 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.80 | 69.0 | 6.05e-01 | 93.1% | 66.9% |
| 4433045 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.80 | 70.0 | 6.30e-01 | 98.0% | 71.1% |
| 3573701 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.79 | 69.0 | 6.21e-01 | 97.0% | 70.4% |
| 4982833 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.67 | 51.0 | 3.49e-01 | 80.2% | 49.3% |
| 4479929 | 601.1.1.89 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › FUSC | 0.63 | 45.0 | 3.67e-01 | 75.2% | 89.2% |
| 4967413 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.60 | 47.0 | 4.39e-01 | 85.1% | 67.2% |
| 3936517 | 192.29.1.114 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Mitofilin | 0.58 | 43.0 | 3.76e-01 | 79.2% | 92.9% |
| 4519499 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.55 | 40.0 | 3.70e-01 | 77.2% | 79.2% |
| 3720548 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.53 | 40.0 | 3.27e-01 | 77.2% | 73.9% |
| 3965294 | 3558.1.1.0 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain | 0.53 | 33.0 | 3.39e-01 | 93.1% | 64.2% |
| 3602572 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.51 | 35.0 | 3.20e-01 | 73.3% | 95.1% |
| 3641083 | 4323.1.1.8 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › NET2A | 0.51 | 38.0 | 3.06e-01 | 78.2% | 85.1% |
D3
medium
residues 13-117
Domain cluster:
rep: ON135435.1__UPI15601.1__PhiBP823_50__00050__D56-144
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01807.26 best | Zn_ribbon_DnaG | 61.8 | 6.40e-17 | 82.9% | 80.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.89 | 71.0 | 7.24e-01 | 88.6% | 85.3% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.56 | 39.0 | 3.88e-01 | 71.4% | 94.5% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.54 | 35.0 | 3.23e-01 | 79.0% | 49.3% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.53 | 39.0 | 3.90e-01 | 79.0% | 97.3% |
| 1yqeA01 | 3.40.630.50 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like | 0.52 | 37.0 | 3.17e-01 | 77.1% | 82.8% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 37.0 | 3.97e-01 | 74.3% | 96.6% |
| 1v7wA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.51 | 35.0 | 2.60e-01 | 71.4% | 88.1% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.50 | 37.0 | 3.54e-01 | 78.1% | 67.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.97 | 77.0 | 7.98e-01 | 81.9% | 88.0% |
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.95 | 72.0 | 7.81e-01 | 78.1% | 91.1% |
| 8015 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.89 | 71.0 | 7.24e-01 | 88.6% | 85.3% |
| 4166935 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.87 | 69.0 | 7.11e-01 | 83.8% | 86.0% |
| 5003468 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.83 | 67.0 | 6.72e-01 | 83.8% | 88.6% |
| 3590274 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 59.0 | 6.41e-01 | 76.2% | 91.1% |
| 3942532 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.78 | 56.0 | 6.15e-01 | 77.1% | 91.8% |
| 3944184 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 61.0 | 6.15e-01 | 85.7% | 94.3% |
| 4940785 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 57.0 | 5.53e-01 | 79.0% | 93.9% |
| 3943026 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.73 | 52.0 | 5.18e-01 | 74.3% | 75.2% |
| 4995759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 51.0 | 5.66e-01 | 73.3% | 100.0% |
| 5022991 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.62 | 39.0 | 4.23e-01 | 75.2% | 74.4% |
| 4999507 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.55 | 36.0 | 4.16e-01 | 75.2% | 98.6% |
| 4178706 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 37.0 | 3.89e-01 | 75.2% | 75.8% |
| 3462595 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 36.0 | 3.83e-01 | 78.1% | 77.8% |
| 3509038 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 40.0 | 4.14e-01 | 78.1% | 83.0% |
| 3332764 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.53 | 36.0 | 3.94e-01 | 78.1% | 85.9% |
| 4465073 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.53 | 41.0 | 4.12e-01 | 81.0% | 82.7% |
| 3995113 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.53 | 38.0 | 3.97e-01 | 75.2% | 88.4% |
| 3252404 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.52 | 38.0 | 4.02e-01 | 77.1% | 89.5% |
| 4928161 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.52 | 38.0 | 3.95e-01 | 78.1% | 90.0% |
| 3885751 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.51 | 35.0 | 3.72e-01 | 71.4% | 87.4% |
| 3476001 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.50 | 38.0 | 3.99e-01 | 80.0% | 94.6% |
| 5007802 | 331.4.1.36 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27851 | 0.50 | 35.0 | 3.88e-01 | 77.1% | 93.8% |
D4
medium
residues 118-202
Domain cluster:
rep: NC_042091.1__YP_009620723.1__FDJ16_gp109__00054__D127-222
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08275.18 best | DNAG_N | 35.9 | 1.00e-08 | 49.4% | 28.9% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4edgA01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.95 | 91.0 | 7.55e-01 | 100.0% | 89.6% |
| 1eqnB01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.93 | 89.0 | 7.55e-01 | 100.0% | 93.7% |
| 2au3A02 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.92 | 88.0 | 7.48e-01 | 100.0% | 90.6% |
| 5w36B01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.91 | 86.0 | 7.23e-01 | 100.0% | 89.6% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.71 | 55.0 | 5.89e-01 | 100.0% | 95.9% |
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 34.0 | 3.96e-01 | 90.6% | 75.0% |
| 2py5A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 39.0 | 3.09e-01 | 100.0% | 31.0% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 37.0 | 4.14e-01 | 96.5% | 84.4% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 33.0 | 3.56e-01 | 90.6% | 66.2% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 33.0 | 3.53e-01 | 87.1% | 65.3% |
| 1xe4A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 46.0 | 3.83e-01 | 91.8% | 93.3% |
| 1lrzA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 46.0 | 3.92e-01 | 91.8% | 90.2% |
| 3p2hA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.74e-01 | 100.0% | 64.1% |
| 1vkcA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.95e-01 | 95.3% | 77.0% |
| 2qecA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 44.0 | 3.61e-01 | 95.3% | 82.8% |
| 1vhsA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 45.0 | 3.72e-01 | 95.3% | 64.2% |
| 3exmA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.53 | 41.0 | 3.19e-01 | 84.7% | 69.7% |
| 3gy9A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 44.0 | 3.77e-01 | 96.5% | 65.5% |
| 3d8pB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 45.0 | 3.76e-01 | 98.8% | 61.9% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 36.0 | 3.57e-01 | 77.6% | 68.2% |
| 3tthB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 43.0 | 3.58e-01 | 95.3% | 80.5% |
| 4h89A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.53e-01 | 95.3% | 96.4% |
| 2ft0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 43.0 | 3.26e-01 | 94.1% | 45.9% |
| 4kh8A01 | 2.40.128.540 | Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 | 0.51 | 39.0 | 3.23e-01 | 83.5% | 73.5% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.51 | 40.0 | 3.61e-01 | 85.9% | 86.0% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 35.0 | 3.36e-01 | 71.8% | 97.0% |
| 2cy2A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 41.0 | 3.35e-01 | 91.8% | 94.8% |
| 2i00A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 3.55e-01 | 96.5% | 59.1% |
| 4jxqA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 3.41e-01 | 96.5% | 56.5% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.50 | 36.0 | 3.62e-01 | 76.5% | 73.0% |
| 5h8yD02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.50 | 37.0 | 2.97e-01 | 82.4% | 96.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4588732 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.96 | 92.0 | 7.62e-01 | 100.0% | 94.1% |
| 3387388 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.95 | 91.0 | 7.77e-01 | 100.0% | 92.8% |
| 3589490 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.94 | 90.0 | 7.49e-01 | 100.0% | 92.6% |
| 4043621 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.94 | 90.0 | 7.27e-01 | 100.0% | 90.3% |
| 4345683 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.94 | 91.0 | 7.71e-01 | 100.0% | 92.0% |
| 4434598 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.93 | 89.0 | 7.50e-01 | 100.0% | 88.5% |
| 4431937 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.93 | 89.0 | 7.29e-01 | 100.0% | 86.4% |
| 4467859 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.93 | 89.0 | 7.61e-01 | 100.0% | 93.6% |
| 4157635 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.92 | 89.0 | 7.58e-01 | 100.0% | 92.8% |
| 1407259 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.92 | 88.0 | 7.52e-01 | 100.0% | 92.0% |
| 4096247 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.92 | 88.0 | 7.52e-01 | 100.0% | 91.2% |
| 4099289 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.92 | 88.0 | 7.37e-01 | 100.0% | 88.5% |
| 4206082 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.90 | 86.0 | 7.26e-01 | 100.0% | 90.8% |
| 4186968 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.88 | 84.0 | 7.06e-01 | 100.0% | 86.9% |
| 4995760 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.82 | 68.0 | 7.16e-01 | 90.6% | 100.0% |
| 3948312 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.77 | 72.0 | 6.76e-01 | 100.0% | 95.0% |
| 4537309 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.77 | 70.0 | 6.79e-01 | 100.0% | 92.6% |
| 3074400 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.77 | 71.0 | 6.73e-01 | 100.0% | 98.0% |
| 4666811 | 243.3.1.51 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › HalC8_like_N | 0.64 | 49.0 | 4.16e-01 | 83.5% | 82.8% |
| 3183104 | 9.4.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF3471 | 0.60 | 44.0 | 3.86e-01 | 77.6% | 98.5% |
| 4934626 | 243.3.1.52 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 | 0.60 | 44.0 | 4.18e-01 | 77.6% | 95.0% |
| 5047099 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.60 | 39.0 | 3.02e-01 | 100.0% | 28.5% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.57 | 33.0 | 3.72e-01 | 90.6% | 75.0% |
| 3587578 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.57 | 49.0 | 4.20e-01 | 100.0% | 66.7% |
| 2675820 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.56 | 32.0 | 3.12e-01 | 87.1% | 50.5% |
| 4672365 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.55 | 44.0 | 3.40e-01 | 95.3% | 47.0% |
| None | — | 0.54 | 45.0 | 3.81e-01 | 95.3% | 72.3% | |
| 3476001 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.54 | 37.0 | 3.69e-01 | 76.5% | 66.7% |
| 3709212 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.52 | 42.0 | 2.49e-01 | 89.4% | 11.7% |
| 4014367 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 42.0 | 3.45e-01 | 95.3% | 72.6% |
| 4975431 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 36.0 | 3.62e-01 | 75.3% | 71.1% |
| None | — | 0.51 | 41.0 | 3.35e-01 | 91.8% | 94.8% | |
| 4161591 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.50 | 39.0 | 3.24e-01 | 84.7% | 73.6% |
| 3793372 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.50 | 29.0 | 3.60e-01 | 90.6% | 98.0% |
D5
medium
residues 203-333
Domain cluster:
rep: IMGVR_UViG_3300042256_000037-3300042256-Ga0451646_00357_7329_9968__D263-392
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13155.13 best | Toprim_2 | 62.6 | 5.10e-17 | 69.5% | 98.9% |
| PF13662.13 | Toprim_4 | 49.5 | 5.40e-13 | 63.4% | 96.4% |
| PF01751.29 | Toprim | 36.0 | 8.70e-09 | 61.8% | 88.5% |