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GU967410.1__ADF83461.1__X__00056

Bact-Vir

GU967410.1__ADF83461.1__X__00056

Identity

Accession:
GU967410 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01541.31 best GIY-YIG 34.7 2.40e-08 100.0% 93.6%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.82 75.0 7.37e-01 100.0% 92.4%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 39.0 3.85e-01 76.7% 51.1%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 40.0 3.63e-01 77.9% 42.0%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 36.0 3.86e-01 76.7% 63.0%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 38.0 3.63e-01 75.6% 53.9%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 33.0 3.58e-01 75.6% 63.9%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.66e-01 74.4% 60.2%
3kopA00 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.58 41.0 3.40e-01 74.4% 100.0%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 42.0 3.03e-01 77.9% 65.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 35.0 3.50e-01 75.6% 57.6%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.56 34.0 3.94e-01 81.4% 100.0%
1t0tV02 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.56 41.0 3.84e-01 77.9% 90.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.56 43.0 4.39e-01 81.4% 97.6%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 40.0 3.63e-01 77.9% 72.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 34.0 3.37e-01 75.6% 57.4%
2mvzA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.54 39.0 3.35e-01 76.7% 99.3%
1p6oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 40.0 3.28e-01 79.1% 72.4%
1w5dA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 3.33e-01 100.0% 92.2%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 39.0 3.54e-01 84.9% 93.0%
3bzvB00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.51 34.0 3.55e-01 100.0% 75.0%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.51 29.0 3.71e-01 88.4% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
77927 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.82 76.0 7.35e-01 100.0% 90.4%
4170310 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.82 67.0 6.65e-01 100.0% 83.3%
5052958 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.82 59.0 6.11e-01 100.0% 80.0%
3496147 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.80 74.0 6.99e-01 98.8% 94.0%
3963488 821.1.1.7 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.79 74.0 6.63e-01 100.0% 76.5%
4026479 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.76 69.0 5.98e-01 100.0% 68.5%
3588235 11.1.4.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.74 41.0 3.88e-01 77.9% 47.0%
5003527 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.71 40.0 3.33e-01 74.4% 32.0%
4945327 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.70 49.0 5.35e-01 100.0% 90.0%
4936239 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 39.0 3.85e-01 91.9% 50.5%
3221959 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.68 40.0 3.15e-01 77.9% 29.4%
5005563 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 40.0 3.71e-01 82.6% 48.2%
3923859 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 3.76e-01 79.1% 53.0%
3601005 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 35.0 3.42e-01 77.9% 48.4%
5029684 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.63 39.0 3.08e-01 79.1% 30.9%
3472406 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.59 38.0 2.63e-01 77.9% 19.0%
3622513 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 40.0 4.50e-01 74.4% 100.0%
3257660 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 3.75e-01 79.1% 53.6%
5033752 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.68e-01 76.7% 58.1%
5027849 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 3.40e-01 87.2% 49.2%
3166939 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.55 49.0 3.61e-01 100.0% 88.7%
4295852 2492.1.1.17 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.55 41.0 3.45e-01 80.2% 82.0%
3743200 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 40.0 3.25e-01 79.1% 75.9%
3909337 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 40.0 3.60e-01 82.6% 58.3%
5000700 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.51 47.0 4.31e-01 100.0% 95.5%
3886965 6094.1.1.0 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase 0.51 40.0 3.96e-01 97.7% 82.2%
D2 high residues 102-162
PDB
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 76.0 7.33e-01 100.0% 85.3%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 46.0 5.11e-01 91.8% 97.8%
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 39.0 3.74e-01 75.4% 50.0%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 3.83e-01 83.6% 50.6%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.53e-01 85.2% 80.8%
4egwA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.63 48.0 3.89e-01 86.9% 80.9%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 43.0 3.64e-01 90.2% 45.8%
2xn2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 43.0 3.69e-01 91.8% 46.9%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 42.0 3.59e-01 88.5% 46.3%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 47.0 3.93e-01 93.4% 75.6%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.59 37.0 4.13e-01 78.7% 84.8%
2kgjA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 50.0 4.33e-01 100.0% 91.2%
1m0wB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.58 39.0 3.97e-01 95.1% 71.7%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.56 38.0 4.17e-01 93.4% 89.8%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.17e-01 82.0% 74.6%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.88e-01 85.2% 69.8%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 37.0 4.26e-01 95.1% 100.0%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 39.0 4.02e-01 100.0% 81.4%
3rgcA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.54 36.0 2.64e-01 96.7% 25.3%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 3.62e-01 100.0% 64.3%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 40.0 3.86e-01 100.0% 71.0%
1a6jB00 3.40.930.10 Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A 0.52 47.0 3.47e-01 100.0% 52.9%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.19e-01 95.1% 76.4%
2fsuA00 3.40.50.11310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH 0.52 39.0 2.86e-01 82.0% 32.9%
1x4hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 42.0 3.52e-01 95.1% 80.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.86 76.0 7.29e-01 100.0% 84.1%
3058113 101.1.14.0 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.85 67.0 7.21e-01 96.7% 100.0%
1030873 101.1.14.1 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-TevI_DNA-bd 0.83 61.0 6.08e-01 96.7% 74.6%
4384880 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.79 69.0 6.09e-01 95.1% 70.6%
4414927 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.77 69.0 6.60e-01 98.4% 88.4%
3480425 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 38.0 4.66e-01 90.2% 88.6%
4988977 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 46.0 5.28e-01 90.2% 100.0%
3675525 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 46.0 4.51e-01 91.8% 64.7%
None 0.67 40.0 3.82e-01 73.8% 51.4%
4420911 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 39.0 3.00e-01 75.4% 25.2%
3718461 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.64 44.0 3.71e-01 70.5% 78.0%
3180104 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.62 45.0 3.93e-01 83.6% 52.2%
3939849 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.61 52.0 3.88e-01 95.1% 49.7%
3413357 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.61 41.0 3.94e-01 70.5% 78.6%
4213132 2007.1.19.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.60 51.0 3.14e-01 100.0% 59.3%
3838194 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.59 36.0 4.11e-01 78.7% 84.4%
5081852 101.1.2.837 alpha arrays › HTH › HTH › winged helix domain › Lin1244_N 0.59 45.0 3.91e-01 85.2% 54.4%
3800155 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.59 43.0 3.87e-01 82.0% 56.5%
4997142 3685.1.1.0 a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain 0.58 46.0 3.66e-01 85.2% 70.0%
3929550 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 46.0 4.36e-01 90.2% 75.7%
3224878 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.57 44.0 3.81e-01 82.0% 60.0%
3798291 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.57 43.0 3.79e-01 82.0% 63.3%
3788382 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.56 43.0 3.92e-01 82.0% 62.5%
3234671 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.56 37.0 3.93e-01 70.5% 90.9%
3516486 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.56 41.0 3.65e-01 82.0% 54.4%
3737858 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 38.0 3.89e-01 95.1% 75.0%
3624465 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 3.21e-01 72.1% 100.0%
3743814 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 44.0 4.07e-01 93.4% 96.2%
3515383 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.52 40.0 3.44e-01 83.6% 73.0%
3166631 304.9.1.34 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET1_RBD 0.52 45.0 3.42e-01 96.7% 69.3%
3411266 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 40.0 3.72e-01 86.9% 93.8%
5051627 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.73e-01 83.6% 74.3%
5059709 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 32.0 3.24e-01 85.2% 63.3%