←Back to structures

GU979516.1__ADI44787.1__X__00001

Bact-Vir

GU979516.1__ADI44787.1__X__00001

Identity

Accession:
GU979516 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Acinetobacter_phage_phiAB2

TaxID: 691319

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
D2 medium residues 74-215
PDB
Domain cluster: rep: NC_030923.1__YP_009275020.1__BH776_gp02__00002__D383-520
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l8eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 42.0 4.64e-01 90.8% 85.5%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.61 45.0 4.07e-01 76.1% 83.9%
3cuxA02 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.56 41.0 4.46e-01 76.1% 100.0%
1qqtA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 36.0 3.73e-01 71.1% 66.7%
4k6jB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 47.0 3.30e-01 92.3% 64.5%
7qx4A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.55 49.0 4.20e-01 99.3% 68.8%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.55 40.0 3.94e-01 76.8% 84.6%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 48.0 4.68e-01 96.5% 91.6%
2i2oA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 45.0 3.93e-01 88.7% 73.9%
3gzsA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 45.0 3.19e-01 96.5% 82.6%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 40.0 4.34e-01 89.4% 100.0%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.52 36.0 3.93e-01 97.9% 87.6%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 45.0 3.79e-01 95.8% 88.0%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 44.0 4.13e-01 92.3% 100.0%
2hkvA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 30.0 3.02e-01 96.5% 58.2%
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.50 36.0 3.92e-01 97.2% 89.1%
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.50 40.0 3.62e-01 85.2% 89.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958817 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 4.47e-01 97.2% 75.5%
3941363 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 45.0 3.86e-01 90.1% 52.0%
3583099 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.94e-01 90.1% 54.3%
3797351 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 3.69e-01 90.1% 52.0%
3436600 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.54 44.0 3.64e-01 87.3% 72.7%
3526729 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.54 44.0 4.09e-01 86.6% 75.4%
3223580 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 43.0 3.73e-01 90.1% 55.0%
3415781 109.25.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.53 37.0 4.06e-01 86.6% 88.7%
4015019 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.97e-01 100.0% 91.2%
3279522 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.52 37.0 3.27e-01 72.5% 60.5%
3246986 109.5.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › adenylylcyclase associated protein, CAP-N › adenylylcyclase associated protein, CAP-N › CAP_N 0.52 37.0 3.51e-01 74.6% 62.3%
4989792 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.52 39.0 3.02e-01 78.9% 66.1%
4960221 5060.1.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.51 45.0 3.42e-01 96.5% 76.5%
3987172 5059.1.1.10 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sulf_transp 0.51 41.0 3.05e-01 83.8% 45.1%
3925844 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.51 45.0 3.71e-01 97.2% 53.2%
5061263 140.1.1.7 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.50 38.0 3.34e-01 78.2% 66.0%
4013090 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.50 38.0 3.75e-01 93.0% 75.3%
D3 medium residues 216-326
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7v7yA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.60 50.0 3.69e-01 91.0% 90.8%
2mgyA01 1.20.1260.100 Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein 0.57 42.0 3.78e-01 79.3% 90.0%
5b2nA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 39.0 2.96e-01 71.2% 89.7%
4ms4B01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 39.0 3.22e-01 74.8% 97.8%
3r64A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 47.0 3.46e-01 92.8% 71.2%
4f0uA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.54 48.0 4.23e-01 95.5% 80.0%
4n03A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 42.0 3.43e-01 82.9% 99.5%
7zghA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 39.0 2.72e-01 76.6% 87.6%
1mswD01 1.10.1320.10 Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain 0.53 38.0 2.74e-01 87.4% 26.1%
7dluA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 38.0 3.94e-01 82.9% 80.0%
4uiqB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 44.0 4.00e-01 93.7% 89.5%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 44.0 3.41e-01 92.8% 73.2%
1b8dA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.52 45.0 3.97e-01 95.5% 79.3%
3sg0A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 3.22e-01 82.9% 95.7%
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 42.0 3.21e-01 93.7% 74.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4332824 106.1.1.2 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome 0.60 44.0 3.91e-01 76.6% 78.8%
3187407 633.10.1.4 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › DUF3429 0.54 35.0 3.04e-01 72.1% 42.4%
5046243 106.1.1.2 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome 0.53 46.0 4.51e-01 93.7% 100.0%
3269670 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.53 46.0 3.42e-01 99.1% 46.6%
51280 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.52 45.0 3.97e-01 95.5% 79.3%
4412785 106.1.1.2 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome 0.51 45.0 4.09e-01 97.3% 94.0%
4192313 106.1.1.2 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome 0.51 45.0 3.92e-01 95.5% 79.4%
3596604 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.51 40.0 3.05e-01 84.7% 54.4%
4005041 601.4.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TorS_sensor_domain 0.50 34.0 3.33e-01 70.3% 92.0%