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GWB1_scaffold_1_prodigal-single.1__X__X__00001
Bact-VirGWB1_scaffold_1_prodigal-single.1__X__X__00001
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-46_83-109_152-166
Domain cluster:
rep: OR067838.1__WLW41492.1__LJIJOHLM_00210__00200__D1-22_57-84_128-144
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01370.28 best | Epimerase | 39.9 | 4.70e-10 | 87.5% | 27.9% |
| PF16363.12 | GDP_Man_Dehyd | 60.0 | 3.90e-16 | 54.5% | 13.0% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1db3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.97 | 94.0 | 6.65e-01 | 100.0% | 43.4% |
| 2pk3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.92 | 87.0 | 6.27e-01 | 100.0% | 41.6% |
| 2b69A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.91 | 85.0 | 6.07e-01 | 100.0% | 44.8% |
| 1gy8D02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.87 | 68.0 | 4.77e-01 | 80.7% | 34.0% |
| 6wjaA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.86 | 67.0 | 4.91e-01 | 80.7% | 35.5% |
| 1d2nA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 3.59e-01 | 81.8% | 87.8% |
| 4gxwB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 40.0 | 2.69e-01 | 73.9% | 91.8% |
| 2x7xA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 39.0 | 3.41e-01 | 72.7% | 67.7% |
| 1pfkA02 | 3.40.50.460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain | 0.55 | 41.0 | 3.69e-01 | 80.7% | 100.0% |
| 1npdB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.52 | 37.0 | 3.25e-01 | 76.1% | 91.3% |
| 1wdkC01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 34.0 | 2.67e-01 | 70.5% | 44.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3706593 | 2003.1.1.72 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd | 0.97 | 94.0 | 6.84e-01 | 100.0% | 89.3% |
| 3227316 | 2003.1.1.72 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd | 0.87 | 81.0 | 5.80e-01 | 100.0% | 38.7% |
| 4315678 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.57 | 39.0 | 3.09e-01 | 70.5% | 72.4% |
| 4345633 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.56 | 39.0 | 3.39e-01 | 72.7% | 72.1% |
| 4954042 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.53 | 38.0 | 2.67e-01 | 76.1% | 71.0% |
| 4029795 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.53 | 37.0 | 2.73e-01 | 75.0% | 36.3% |
| 3443914 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.51 | 40.0 | 3.49e-01 | 89.8% | 70.7% |
D2
medium
residues 47-82_110-151_167-186
Domain cluster:
rep: GDP-D-mannose_dehydratase__YP_009325563__Only_Syngen_Nebraska_virus_5__1917232__D190-218_249-308_329-344
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16363.12 best | GDP_Man_Dehyd | 32.9 | 7.00e-08 | 38.8% | 11.1% |