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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00009

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00009

Identity

Kingdom:
phage

Quality

67.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 3.73e-01 70.0% 32.3%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 51.0 5.27e-01 83.3% 78.9%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.72 60.0 5.38e-01 100.0% 65.2%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 51.0 5.29e-01 85.0% 86.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 46.0 3.86e-01 73.3% 43.1%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 53.0 5.21e-01 100.0% 83.6%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 56.0 4.81e-01 100.0% 64.6%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 55.0 4.67e-01 100.0% 59.6%
8e7cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 55.0 5.05e-01 100.0% 77.8%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 56.0 4.44e-01 100.0% 62.1%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.63 55.0 4.47e-01 100.0% 76.3%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 49.0 4.12e-01 90.0% 91.2%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.62 53.0 5.02e-01 100.0% 84.9%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.61 49.0 3.71e-01 90.0% 82.8%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.60 46.0 4.21e-01 100.0% 62.8%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.59 40.0 2.47e-01 70.0% 30.7%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.98e-01 100.0% 53.5%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.58 49.0 4.46e-01 100.0% 96.5%
2z2mD01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.58 32.0 3.28e-01 78.3% 50.8%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 4.14e-01 100.0% 58.3%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 47.0 4.25e-01 100.0% 65.6%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.57 39.0 3.51e-01 73.3% 59.1%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.57 45.0 4.20e-01 100.0% 68.2%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.94e-01 93.3% 68.0%
3lnnA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 44.0 3.97e-01 100.0% 68.1%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 32.0 3.03e-01 100.0% 47.9%
8fd9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 46.0 4.30e-01 100.0% 79.2%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 39.0 2.69e-01 85.0% 89.2%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.53 47.0 3.60e-01 100.0% 68.1%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 3.77e-01 100.0% 56.4%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 47.0 3.80e-01 100.0% 54.0%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.79e-01 100.0% 60.4%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 42.0 3.38e-01 100.0% 48.9%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 42.0 3.19e-01 95.0% 83.6%
1zpuA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 38.0 2.65e-01 80.0% 76.8%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 33.0 2.33e-01 75.0% 18.9%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 41.0 3.60e-01 98.3% 92.0%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 41.0 3.11e-01 95.0% 82.9%
7agvB01 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.50 41.0 3.76e-01 93.3% 86.4%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064515 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.79 56.0 5.63e-01 83.3% 75.0%
4055193 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.79 68.0 5.89e-01 100.0% 62.1%
4423739 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.78 67.0 5.84e-01 100.0% 62.1%
4353877 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.77 66.0 5.74e-01 100.0% 62.1%
4060133 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.76 67.0 5.89e-01 100.0% 67.8%
3839955 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.76 54.0 5.68e-01 83.3% 81.8%
4438946 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.76 66.0 5.91e-01 100.0% 69.4%
5004368 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 56.0 5.81e-01 83.3% 85.5%
4299010 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 66.0 5.67e-01 100.0% 66.3%
4452870 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.75 65.0 5.74e-01 100.0% 66.7%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 65.0 5.53e-01 100.0% 67.0%
4203993 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.74 64.0 5.59e-01 100.0% 63.2%
3966626 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 62.0 5.51e-01 100.0% 64.4%
4619658 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.74 63.0 5.49e-01 100.0% 62.1%
5037092 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 55.0 5.27e-01 81.7% 88.6%
4208972 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.73 63.0 5.39e-01 100.0% 59.0%
4087903 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.73 64.0 5.61e-01 100.0% 66.7%
4042679 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.73 62.0 5.60e-01 100.0% 69.4%
4063137 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.73 63.0 5.56e-01 100.0% 66.7%
1175750 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.72 51.0 4.74e-01 83.3% 58.4%
4381868 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 62.0 5.45e-01 100.0% 65.6%
4205951 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 63.0 5.43e-01 100.0% 63.2%
4666540 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 63.0 5.63e-01 100.0% 70.6%
4592324 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 62.0 5.51e-01 100.0% 67.8%
4505321 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.72 53.0 5.55e-01 85.0% 87.3%
4267752 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 60.0 5.29e-01 100.0% 64.2%
4951165 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.71 54.0 5.57e-01 83.3% 89.1%
5012286 284.4.1.1 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.70 51.0 5.12e-01 83.3% 76.7%
4952899 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 59.0 5.48e-01 100.0% 72.5%
5033424 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 53.0 5.37e-01 85.0% 81.7%
5036381 284.4.1.1 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.70 50.0 5.10e-01 83.3% 76.7%
5076062 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 48.0 4.98e-01 83.3% 78.2%
4399542 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 58.0 5.20e-01 100.0% 64.4%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 61.0 5.60e-01 100.0% 77.5%
4493188 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 59.0 5.18e-01 100.0% 62.1%
4964533 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 4.62e-01 100.0% 67.1%
4006301 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.69 52.0 5.42e-01 85.0% 89.1%
4172288 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.68 57.0 5.10e-01 100.0% 73.3%
2528374 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 51.0 4.75e-01 85.0% 63.6%
4981303 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.67 51.0 5.28e-01 85.0% 89.1%
4071868 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 56.0 5.01e-01 100.0% 65.6%
3998386 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.66 45.0 3.66e-01 71.7% 40.0%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 55.0 4.50e-01 95.0% 71.3%
4937158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.53e-01 73.3% 75.0%
3171334 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.65 56.0 4.68e-01 100.0% 71.8%
4033712 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 54.0 4.93e-01 98.3% 75.3%
3291549 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 57.0 4.74e-01 100.0% 59.0%
4285594 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.64 53.0 4.24e-01 100.0% 45.6%
4973665 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.99e-01 100.0% 72.9%
5075955 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 4.78e-01 100.0% 75.3%
3969131 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 55.0 4.76e-01 100.0% 65.3%
5063922 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.63 50.0 4.08e-01 90.0% 90.8%
4932996 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 4.78e-01 100.0% 67.8%
4069807 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 51.0 4.45e-01 100.0% 63.0%
4285300 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 51.0 4.48e-01 100.0% 92.6%
4563164 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.60 51.0 4.21e-01 100.0% 54.8%
3585584 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 52.0 3.20e-01 100.0% 18.1%
4932851 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.60 43.0 3.39e-01 76.7% 87.4%
4964649 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 4.56e-01 100.0% 71.8%
1878249 11.1.1.256 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.59 49.0 4.23e-01 100.0% 58.3%
3268048 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.57e-01 100.0% 86.7%
3469125 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 47.0 3.85e-01 100.0% 46.2%
3972645 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 46.0 3.78e-01 100.0% 46.7%
3972868 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 46.0 4.09e-01 100.0% 64.0%
3802051 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.17e-01 100.0% 63.2%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.13e-01 100.0% 64.2%
5079697 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.49e-01 100.0% 81.2%
3967111 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.56 49.0 3.90e-01 100.0% 86.4%
360905 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 44.0 3.72e-01 90.0% 55.6%
3366352 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.54 43.0 3.91e-01 95.0% 86.7%
4961968 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.53 43.0 3.16e-01 93.3% 74.4%
4970307 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.76e-01 100.0% 63.5%
5053627 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.52 38.0 2.49e-01 80.0% 87.7%
3383246 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.52 43.0 3.94e-01 100.0% 75.3%
3392944 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.83e-01 100.0% 63.0%
4252702 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.51 37.0 2.47e-01 81.7% 86.2%
3830192 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 41.0 3.62e-01 100.0% 61.0%