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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00027
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00027
Identity
- Kingdom:
- phage
Quality
73.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-78
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 69.0 | 6.44e-01 | 100.0% | 70.7% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 67.0 | 6.74e-01 | 100.0% | 85.3% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 67.0 | 6.45e-01 | 100.0% | 78.7% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 66.0 | 6.24e-01 | 100.0% | 82.3% |
| 1nh2D02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.72 | 48.0 | 5.53e-01 | 72.1% | 97.9% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.71 | 54.0 | 4.59e-01 | 100.0% | 50.5% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 59.0 | 4.71e-01 | 100.0% | 47.0% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 60.0 | 5.47e-01 | 100.0% | 71.1% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 51.0 | 5.29e-01 | 100.0% | 85.5% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.67 | 52.0 | 4.58e-01 | 100.0% | 55.8% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.65 | 55.0 | 4.61e-01 | 100.0% | 60.6% |
| 2vgmA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.64 | 56.0 | 4.66e-01 | 100.0% | 58.2% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 49.0 | 4.48e-01 | 82.4% | 100.0% |
| 2i4kA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 44.0 | 3.61e-01 | 75.0% | 78.1% |
| 4i3gA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 3.57e-01 | 73.5% | 93.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 50.0 | 4.88e-01 | 100.0% | 88.2% |
| 5azsA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.58 | 45.0 | 4.23e-01 | 83.8% | 81.9% |
| 5u81A01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.56 | 41.0 | 2.84e-01 | 80.9% | 95.0% |
| 1idpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 44.0 | 3.53e-01 | 89.7% | 85.7% |
| 5azpA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.56 | 43.0 | 4.09e-01 | 83.8% | 82.7% |
| 2qdeA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 49.0 | 3.94e-01 | 100.0% | 95.6% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 48.0 | 3.66e-01 | 100.0% | 94.4% |
| 1lwuC01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.54 | 39.0 | 3.11e-01 | 100.0% | 35.1% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 3.59e-01 | 92.6% | 79.5% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 3.84e-01 | 92.6% | 84.0% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 2.84e-01 | 70.6% | 37.3% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 3.28e-01 | 89.7% | 84.9% |
| 3fzxA00 | 2.40.360.20 | Mainly Beta › Beta Barrel › YmcC-like fold › | 0.52 | 40.0 | 2.98e-01 | 88.2% | 56.6% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 39.0 | 3.68e-01 | 82.4% | 86.7% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.36e-01 | 100.0% | 65.1% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 41.0 | 3.36e-01 | 92.6% | 87.3% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.66e-01 | 89.7% | 75.5% |
| 2chcC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.21e-01 | 92.6% | 68.6% |
| 1jkgB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 39.0 | 3.07e-01 | 91.2% | 76.1% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.50 | 42.0 | 3.87e-01 | 98.5% | 82.1% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 39.0 | 3.12e-01 | 89.7% | 71.4% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.50 | 40.0 | 3.25e-01 | 89.7% | 86.9% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.87 | 68.0 | 6.00e-01 | 100.0% | 58.9% |
| 3283097 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.83 | 66.0 | 5.56e-01 | 100.0% | 52.7% |
| 4152374 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 68.0 | 6.27e-01 | 100.0% | 78.6% |
| 4030011 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.72 | 64.0 | 5.80e-01 | 100.0% | 74.4% |
| 5025498 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.71 | 60.0 | 5.44e-01 | 100.0% | 68.9% |
| 4932882 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.69 | 60.0 | 4.87e-01 | 100.0% | 60.0% |
| 4517543 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.67 | 60.0 | 4.90e-01 | 100.0% | 62.4% |
| 4215369 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.67 | 59.0 | 4.84e-01 | 100.0% | 63.2% |
| 3272197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 58.0 | 5.06e-01 | 100.0% | 64.8% |
| 4941652 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.66 | 57.0 | 4.74e-01 | 100.0% | 63.2% |
| 4999914 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.66 | 59.0 | 4.74e-01 | 100.0% | 62.3% |
| 3502311 | 3523.1.1.2 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N | 0.65 | 52.0 | 4.58e-01 | 89.7% | 58.3% |
| 3584109 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 4.45e-01 | 98.5% | 66.7% |
| 4536848 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.65 | 57.0 | 4.64e-01 | 100.0% | 63.1% |
| 3924619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 49.0 | 4.10e-01 | 100.0% | 46.7% |
| 2552660 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.65 | 56.0 | 4.63e-01 | 100.0% | 60.6% |
| 3449235 | 4.1.1.173 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4216 | 0.63 | 55.0 | 4.17e-01 | 100.0% | 54.1% |
| 3894481 | 277.1.1.5 ↗ | a+b two layers › PX domain › PX domain › PX domain › Vps5 | 0.62 | 43.0 | 2.71e-01 | 73.5% | 27.0% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.61 | 50.0 | 5.05e-01 | 98.5% | 91.4% |
| 3263743 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.61 | 53.0 | 4.42e-01 | 100.0% | 98.4% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.61 | 52.0 | 5.00e-01 | 100.0% | 83.7% |
| 5058724 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 53.0 | 4.37e-01 | 100.0% | 60.8% |
| 3631313 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.59 | 53.0 | 3.85e-01 | 100.0% | 38.4% |
| 3970394 | 4252.1.1.10 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 | 0.58 | 45.0 | 3.77e-01 | 88.2% | 53.1% |
| 4060896 | 4252.1.1.5 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Svf1 | 0.58 | 51.0 | 3.65e-01 | 100.0% | 81.8% |
| 5043905 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.57 | 36.0 | 2.55e-01 | 100.0% | 19.1% |
| 3903091 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.56 | 40.0 | 2.53e-01 | 76.5% | 23.8% |
| 3225768 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.56 | 48.0 | 3.65e-01 | 100.0% | 62.4% |
| 5071182 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.55 | 46.0 | 3.62e-01 | 89.7% | 95.5% |
| 4664187 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.54 | 41.0 | 3.15e-01 | 82.4% | 71.6% |
| 3348897 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.54 | 37.0 | 2.94e-01 | 73.5% | 95.5% |
| 3619513 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.53 | 41.0 | 3.04e-01 | 88.2% | 62.9% |
| 4470749 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 44.0 | 3.57e-01 | 94.1% | 75.6% |
| 3265608 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.53 | 43.0 | 3.64e-01 | 92.6% | 88.3% |
| 3395894 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.52 | 45.0 | 2.85e-01 | 100.0% | 94.0% |
| 4466051 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.52 | 38.0 | 3.01e-01 | 79.4% | 79.3% |
| 5070350 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.52 | 43.0 | 3.32e-01 | 91.2% | 89.3% |
| 3600093 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.52 | 38.0 | 3.06e-01 | 79.4% | 54.1% |
| None | — | 0.51 | 37.0 | 2.67e-01 | 79.4% | 26.4% | |
| 4048578 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.51 | 41.0 | 3.06e-01 | 89.7% | 73.3% |
| 3859609 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.51 | 40.0 | 3.06e-01 | 92.6% | 76.3% |
| 4304169 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.51 | 41.0 | 3.08e-01 | 89.7% | 68.0% |
| 4343392 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 43.0 | 3.74e-01 | 100.0% | 85.5% |
| 6078 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.50 | 38.0 | 3.02e-01 | 83.8% | 80.9% |