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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00045

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00045

Identity

Kingdom:
phage

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-84
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.74 54.0 4.87e-01 80.5% 56.1%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 53.0 4.02e-01 90.9% 35.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.66 53.0 5.26e-01 88.3% 97.5%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.66 44.0 3.54e-01 70.1% 70.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.65 52.0 4.13e-01 85.7% 74.7%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.65 57.0 5.39e-01 100.0% 95.8%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 56.0 4.93e-01 100.0% 87.6%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 51.0 4.01e-01 85.7% 97.5%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.64 54.0 3.43e-01 93.5% 50.5%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 53.0 3.31e-01 92.2% 41.1%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.63 50.0 3.40e-01 88.3% 41.8%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 55.0 3.59e-01 98.7% 82.8%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 52.0 3.25e-01 94.8% 69.0%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 48.0 3.10e-01 81.8% 61.8%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 53.0 3.46e-01 94.8% 46.4%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 49.0 4.67e-01 87.0% 93.6%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 46.0 4.04e-01 77.9% 92.1%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 51.0 3.34e-01 89.6% 38.5%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 50.0 3.26e-01 88.3% 53.9%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 39.0 3.76e-01 79.2% 54.3%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.90e-01 96.1% 61.0%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 49.0 4.09e-01 88.3% 97.1%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 47.0 3.86e-01 83.1% 45.8%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 43.0 3.71e-01 81.8% 46.4%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.60 47.0 4.19e-01 84.4% 77.9%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.60 51.0 3.70e-01 93.5% 35.9%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.60 47.0 4.10e-01 88.3% 54.0%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 47.0 4.55e-01 87.0% 80.7%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 47.0 4.47e-01 89.6% 90.5%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.59 40.0 3.86e-01 71.4% 66.3%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.14e-01 98.7% 68.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 48.0 3.91e-01 89.6% 72.6%
3lf7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 48.0 3.06e-01 93.5% 46.7%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.58 46.0 4.01e-01 85.7% 66.1%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 4.08e-01 94.8% 79.1%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 50.0 3.40e-01 100.0% 99.0%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 49.0 3.38e-01 100.0% 99.4%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.94e-01 93.5% 33.3%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.51e-01 93.5% 53.6%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 44.0 3.04e-01 88.3% 37.4%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 41.0 3.65e-01 77.9% 52.6%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.74e-01 85.7% 59.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 45.0 4.16e-01 89.6% 97.0%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 45.0 4.15e-01 90.9% 84.6%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.83e-01 85.7% 80.5%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.84e-01 92.2% 63.2%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 49.0 3.82e-01 97.4% 83.2%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 49.0 3.75e-01 96.1% 95.7%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 3.08e-01 93.5% 41.9%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 34.0 3.68e-01 72.7% 84.5%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.20e-01 97.4% 71.2%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 39.0 3.37e-01 81.8% 72.8%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.77e-01 88.3% 38.1%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 38.0 3.15e-01 85.7% 88.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937428 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.74 42.0 3.35e-01 79.2% 29.7%
5006845 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.70 46.0 5.27e-01 76.6% 94.5%
3217673 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 53.0 4.76e-01 81.8% 62.9%
3290321 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 54.0 4.91e-01 84.4% 84.0%
3276059 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.67 54.0 3.40e-01 87.0% 35.0%
5041541 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 47.0 4.51e-01 74.0% 83.3%
4003669 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.67 58.0 3.52e-01 94.8% 36.3%
3477607 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 58.0 3.33e-01 98.7% 13.2%
3619501 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.66 55.0 3.70e-01 93.5% 57.7%
3826655 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 53.0 3.62e-01 89.6% 46.2%
4486741 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 51.0 3.26e-01 83.1% 22.3%
3217981 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.66 49.0 3.74e-01 81.8% 35.3%
3407108 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 51.0 3.24e-01 83.1% 21.6%
3583345 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.65 54.0 3.33e-01 89.6% 38.9%
3624476 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 51.0 3.08e-01 85.7% 23.4%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.65 52.0 3.57e-01 87.0% 69.8%
4929596 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 55.0 3.40e-01 94.8% 32.3%
3781182 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 55.0 3.42e-01 93.5% 28.5%
3421658 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 49.0 4.77e-01 80.5% 78.8%
3934802 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.64 54.0 5.07e-01 93.5% 86.3%
4017784 5.1.3.172 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF26607 0.64 52.0 3.45e-01 88.3% 52.7%
3261845 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 56.0 3.58e-01 97.4% 39.5%
2803292 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.64 53.0 3.57e-01 93.5% 72.9%
3188230 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 52.0 3.53e-01 92.2% 42.0%
3276359 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 52.0 3.30e-01 89.6% 33.9%
3928054 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 50.0 3.47e-01 88.3% 54.3%
3505083 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 52.0 3.36e-01 90.9% 26.2%
3721094 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 53.0 3.85e-01 94.8% 50.9%
3631839 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.62 50.0 3.25e-01 90.9% 22.0%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 43.0 2.99e-01 81.8% 21.6%
3892091 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 39.0 2.94e-01 79.2% 25.8%
3618450 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 44.0 4.05e-01 75.3% 76.0%
4140248 5.1.4.577 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YqgU 0.61 53.0 3.52e-01 96.1% 41.9%
3445272 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.31e-01 93.5% 33.2%
4196888 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.61 54.0 3.41e-01 98.7% 49.1%
3628265 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 51.0 3.20e-01 93.5% 37.2%
3709267 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.61 52.0 3.47e-01 100.0% 88.8%
3814061 5.1.3.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_FKB95 0.60 46.0 3.10e-01 84.4% 39.0%
2589440 4036.1.1.1 a+b two layers › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Anthrax_toxA 0.60 37.0 3.17e-01 83.1% 37.8%
None 0.60 47.0 3.24e-01 88.3% 41.7%
4526577 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.60 46.0 3.27e-01 87.0% 38.5%
3924597 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.59 39.0 4.11e-01 75.3% 75.7%
4432262 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.59 38.0 3.29e-01 79.2% 40.8%
3586270 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 3.11e-01 93.5% 36.6%
3535970 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.59 41.0 3.17e-01 74.0% 72.8%
5015845 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.59 45.0 3.51e-01 81.8% 84.8%
3806993 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 48.0 3.40e-01 92.2% 43.3%
5051694 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.57 43.0 3.92e-01 83.1% 88.2%
None 0.57 47.0 3.22e-01 92.2% 84.1%
None 0.57 47.0 3.72e-01 90.9% 75.2%
4974812 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 3.17e-01 96.1% 54.9%
4386896 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 44.0 2.97e-01 89.6% 91.0%
3624613 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 44.0 3.92e-01 93.5% 78.3%
5042256 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 43.0 3.97e-01 90.9% 84.8%
3276831 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 41.0 3.93e-01 87.0% 92.2%
3249214 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 42.0 3.69e-01 90.9% 71.7%
3518515 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 44.0 2.63e-01 96.1% 45.9%
3280079 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 40.0 3.36e-01 84.4% 95.4%
3255259 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 41.0 3.62e-01 89.6% 71.3%
4332616 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 40.0 3.19e-01 88.3% 86.4%