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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00098
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00098
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 116-242
Domain cluster:
rep: CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00558__D117-218
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.58 | 39.0 | 4.46e-01 | 73.2% | 91.6% |
| 2bs6A01 | 2.40.128.190 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 29.0 | 3.55e-01 | 70.9% | 73.8% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 40.0 | 4.00e-01 | 75.6% | 98.5% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 40.0 | 4.03e-01 | 74.0% | 99.2% |
| 5swiD01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 38.0 | 3.11e-01 | 71.7% | 94.7% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.55 | 39.0 | 3.73e-01 | 72.4% | 88.4% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 39.0 | 3.92e-01 | 73.2% | 99.2% |
| 3auxA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 36.0 | 2.64e-01 | 78.7% | 24.7% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 38.0 | 3.61e-01 | 73.2% | 79.6% |
| 1mdcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 38.0 | 3.77e-01 | 71.7% | 92.4% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 39.0 | 3.87e-01 | 75.6% | 98.5% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.53 | 38.0 | 3.12e-01 | 85.0% | 40.7% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.52 | 37.0 | 3.27e-01 | 71.7% | 66.7% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 40.0 | 3.92e-01 | 81.1% | 96.5% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.52 | 37.0 | 3.35e-01 | 74.0% | 91.0% |
| 3sh4A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.47e-01 | 82.7% | 68.7% |
| 5ee2A00 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 37.0 | 3.82e-01 | 75.6% | 87.7% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 40.0 | 3.23e-01 | 84.3% | 48.6% |
| 2vt8A00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.51 | 41.0 | 4.00e-01 | 86.6% | 100.0% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 40.0 | 3.90e-01 | 85.0% | 95.7% |
| 2wmfA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 35.0 | 3.54e-01 | 70.9% | 92.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596915 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 45.0 | 2.88e-01 | 74.8% | 37.7% |
| 5049183 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 40.0 | 4.12e-01 | 90.6% | 71.2% |
| 4991973 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 45.0 | 3.43e-01 | 78.7% | 66.1% |
| 5037595 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.58 | 44.0 | 3.10e-01 | 79.5% | 33.3% |
| 3785319 | 9.14.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 | 0.56 | 36.0 | 4.20e-01 | 76.4% | 96.5% |
| 4032202 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.54 | 38.0 | 3.42e-01 | 71.7% | 85.1% |
| 5038572 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 42.0 | 3.98e-01 | 83.5% | 88.0% |
| 5035423 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 31.0 | 3.73e-01 | 74.0% | 88.2% |
| 4492101 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.52 | 33.0 | 3.78e-01 | 76.4% | 87.8% |
| 3474457 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.51 | 30.0 | 3.49e-01 | 77.2% | 78.9% |
| 5014493 | 331.3.1.12 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like | 0.51 | 44.0 | 3.65e-01 | 96.1% | 93.9% |
| 3733356 | 298.1.1.25 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C | 0.50 | 37.0 | 3.36e-01 | 74.8% | 65.5% |
| 3967111 | 3338.2.1.2 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin | 0.50 | 39.0 | 3.97e-01 | 81.1% | 92.0% |
| 4014784 | 9.14.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 | 0.50 | 36.0 | 4.06e-01 | 75.6% | 98.0% |
| 3432311 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.50 | 42.0 | 3.87e-01 | 89.0% | 93.8% |
D2
medium
residues 3-60
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.61 | 52.0 | 4.66e-01 | 94.8% | 72.8% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.61 | 47.0 | 4.85e-01 | 93.1% | 89.1% |
| 3luyA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 47.0 | 3.87e-01 | 100.0% | 94.8% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.55 | 40.0 | 3.74e-01 | 79.3% | 80.5% |
| 3clqA04 | 3.90.1700.10 | Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like | 0.54 | 41.0 | 3.02e-01 | 84.5% | 93.5% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 40.0 | 2.51e-01 | 84.5% | 88.2% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.26e-01 | 81.0% | 95.3% |
| 4ebjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 42.0 | 3.44e-01 | 100.0% | 92.2% |
| 3i3lA02 | 3.30.390.160 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.52 | 37.0 | 2.86e-01 | 94.8% | 35.2% |
| 2aw4Z00 | 4.10.830.30 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 | 0.51 | 36.0 | 3.48e-01 | 77.6% | 84.3% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.03e-01 | 82.8% | 87.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3608274 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.75 | 48.0 | 4.93e-01 | 81.0% | 69.1% |
| 3700573 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.73 | 61.0 | 5.14e-01 | 91.4% | 72.6% |
| 4961820 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 60.0 | 5.97e-01 | 91.4% | 93.3% |
| 3745904 | 377.1.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e | 0.68 | 48.0 | 4.44e-01 | 77.6% | 58.7% |
| 3274340 | 376.1.2.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 | 0.67 | 54.0 | 4.91e-01 | 89.7% | 66.7% |
| 3736457 | 376.1.1.96 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ_ADA2 | 0.64 | 50.0 | 4.56e-01 | 82.8% | 64.0% |
| 3784386 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 43.0 | 4.82e-01 | 74.1% | 93.3% |
| 5002376 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 4.31e-01 | 94.8% | 51.4% |
| 3574842 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.62 | 50.0 | 4.20e-01 | 91.4% | 58.1% |
| 3866121 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.62 | 43.0 | 4.74e-01 | 81.0% | 95.6% |
| 1002460 | 378.1.1.3 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 | 0.61 | 52.0 | 4.62e-01 | 94.8% | 71.1% |
| 3749973 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.61 | 44.0 | 4.83e-01 | 82.8% | 97.8% |
| 3394526 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.60 | 40.0 | 4.42e-01 | 75.9% | 88.9% |
| 5031333 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 42.0 | 4.72e-01 | 74.1% | 95.6% |
| 1688302 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 39.0 | 2.83e-01 | 79.3% | 22.8% |
| 3714738 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.58 | 43.0 | 3.37e-01 | 82.8% | 38.3% |
| 3794167 | 376.1.3.30 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF | 0.58 | 48.0 | 3.96e-01 | 89.7% | 53.5% |
| 4811950 | 866.1.1.1 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › FliM | 0.55 | 40.0 | 3.72e-01 | 87.9% | 60.8% |
| 3808817 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.55 | 44.0 | 3.34e-01 | 91.4% | 83.2% |
| 3941757 | 101.1.9.32 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT | 0.54 | 38.0 | 2.90e-01 | 72.4% | 69.2% |
| 3554204 | 109.4.1.2271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med16_C | 0.53 | 40.0 | 4.27e-01 | 81.0% | 94.0% |
| 3511457 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 39.0 | 3.02e-01 | 82.8% | 85.2% |