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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00138
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00138
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-78
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hwjA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 45.0 | 4.83e-01 | 86.5% | 96.7% |
| 2qcuB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 41.0 | 2.99e-01 | 78.4% | 87.3% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.56 | 41.0 | 3.97e-01 | 81.1% | 68.6% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.55 | 38.0 | 3.80e-01 | 71.6% | 75.0% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 46.0 | 4.48e-01 | 97.3% | 91.8% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.54 | 42.0 | 4.13e-01 | 85.1% | 84.0% |
| 2m0aA01 | 3.10.20.350 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 34.0 | 3.21e-01 | 83.8% | 49.5% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.53 | 45.0 | 4.14e-01 | 94.6% | 71.7% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 44.0 | 4.25e-01 | 98.6% | 85.2% |
| 1oizA01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.51 | 35.0 | 3.62e-01 | 85.1% | 76.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3328535 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.66 | 50.0 | 5.50e-01 | 81.1% | 100.0% |
| 4200734 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.62 | 48.0 | 3.66e-01 | 86.5% | 68.5% |
| 2947 | 5102.1.1.1 ↗ | alpha arrays › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › ParBc_2 | 0.57 | 44.0 | 3.85e-01 | 82.4% | 75.5% |
| 3245000 | 4338.1.1.0 ↗ | alpha complex topology › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like | 0.55 | 40.0 | 3.88e-01 | 77.0% | 76.5% |
| 3289996 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 46.0 | 3.95e-01 | 100.0% | 68.9% |
| 3967936 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.55 | 43.0 | 4.35e-01 | 87.8% | 88.0% |
| 3223726 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.53 | 41.0 | 3.40e-01 | 86.5% | 69.7% |
| 4999090 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 44.0 | 3.73e-01 | 95.9% | 70.8% |
| 3669784 | 1079.1.1.12 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › GDT1 | 0.50 | 37.0 | 2.70e-01 | 79.7% | 56.3% |