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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00149
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00149
Identity
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 342-433
Domain cluster:
rep: IMGVR_UViG_3300010332_000127-3300010332-Ga0116200_100039035__D12-102
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14279.13 | HNH_5 | 33.9 | 3.40e-08 | 40.2% | 66.1% |
| PF01844.30 best | HNH | 38.3 | 1.70e-09 | 40.2% | 83.0% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.73 | 54.0 | 5.71e-01 | 78.3% | 88.0% |
| 2ja2A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.59 | 32.0 | 4.03e-01 | 77.2% | 92.3% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.58 | 38.0 | 4.17e-01 | 100.0% | 84.7% |
| 3fm9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 38.0 | 4.09e-01 | 98.9% | 84.6% |
| 1sxjE02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 37.0 | 4.18e-01 | 84.8% | 100.0% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 41.0 | 4.05e-01 | 96.7% | 76.3% |
| 4tpvA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.54 | 40.0 | 3.27e-01 | 79.3% | 64.8% |
| 1nxuA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.52 | 40.0 | 4.25e-01 | 96.7% | 94.9% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.52 | 28.0 | 3.57e-01 | 77.2% | 100.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.76 | 52.0 | 5.46e-01 | 89.1% | 76.5% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.76 | 51.0 | 5.89e-01 | 81.5% | 96.9% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 52.0 | 5.20e-01 | 85.9% | 68.4% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 63.0 | 5.70e-01 | 91.3% | 76.8% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.75 | 50.0 | 5.85e-01 | 85.9% | 96.9% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.75 | 55.0 | 5.47e-01 | 77.2% | 78.4% |
| 3963404 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.74 | 55.0 | 5.51e-01 | 78.3% | 89.5% |
| 3965880 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 56.0 | 5.77e-01 | 80.4% | 97.8% |
| 3953218 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.74 | 51.0 | 4.26e-01 | 81.5% | 42.6% |
| 3953059 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 49.0 | 4.95e-01 | 82.6% | 68.9% |
| 3952923 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 49.0 | 4.77e-01 | 80.4% | 63.0% |
| 4937899 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 51.0 | 5.16e-01 | 77.2% | 73.3% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 51.0 | 5.15e-01 | 78.3% | 73.4% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 48.0 | 4.82e-01 | 80.4% | 67.4% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 52.0 | 5.57e-01 | 84.8% | 87.5% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.68 | 52.0 | 4.88e-01 | 91.3% | 65.2% |
| 3952892 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.63 | 51.0 | 4.60e-01 | 85.9% | 66.4% |
| 4665138 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 40.0 | 3.81e-01 | 80.4% | 75.7% |
| 3592851 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.53 | 41.0 | 2.92e-01 | 84.8% | 32.5% |
| 4941549 | 148.1.3.29 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LonB_AAA-LID | 0.53 | 40.0 | 3.73e-01 | 80.4% | 73.0% |
D2
medium
residues 4-65
Domain cluster:
rep: IMGVR_UViG_3300028601_000785-3300028601-Ga0265295_100223635__D1-73
D3
medium
residues 83-199
Domain cluster:
representative
D4
medium
residues 202-280
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cnqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 42.0 | 3.50e-01 | 83.5% | 87.4% |
| 3al8B02 | 3.30.1680.10 | Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 | 0.54 | 23.0 | 3.13e-01 | 81.0% | 78.8% |
| 1vd4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 30.0 | 3.34e-01 | 86.1% | 74.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3884815 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.55 | 29.0 | 2.19e-01 | 87.3% | 18.6% |
| 5009381 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 30.0 | 3.22e-01 | 88.6% | 67.1% |
D5
medium
residues 281-341
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3400006 | 109.4.1.1623 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS7_N, INTS7_HB | 0.59 | 48.0 | 2.70e-01 | 93.4% | 22.0% |
| 3757082 | 189.1.1.0 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP | 0.55 | 46.0 | 2.98e-01 | 98.4% | 79.1% |