Back to structures

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00150

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00150

Identity

Kingdom:
phage

Quality

69.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-164
PDB
D2 high residues 181-243
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 57.0 6.10e-01 71.4% 85.2%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 58.0 5.82e-01 77.8% 74.6%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 56.0 6.05e-01 92.1% 85.2%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 55.0 5.54e-01 73.0% 80.6%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 54.0 5.68e-01 74.6% 82.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 5.16e-01 77.8% 62.7%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.12e-01 73.0% 66.7%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 5.74e-01 71.4% 92.0%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.76 54.0 5.28e-01 74.6% 72.1%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.76 52.0 4.12e-01 73.0% 35.7%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 5.19e-01 73.0% 71.6%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.75 53.0 4.17e-01 77.8% 35.9%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.01e-01 77.8% 63.2%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 48.0 5.47e-01 71.4% 97.7%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.73 53.0 3.91e-01 76.2% 51.6%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 4.39e-01 71.4% 48.4%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 5.35e-01 77.8% 78.7%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 4.89e-01 74.6% 69.9%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.72 53.0 4.66e-01 79.4% 64.6%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 4.45e-01 71.4% 70.2%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 4.96e-01 74.6% 71.9%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.14e-01 79.4% 41.7%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 4.00e-01 81.0% 35.9%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.21e-01 81.0% 48.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 3.93e-01 74.6% 43.4%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.09e-01 79.4% 41.3%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 47.0 4.04e-01 71.4% 64.6%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.14e-01 85.7% 41.5%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.17e-01 88.9% 80.0%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.45e-01 73.0% 98.7%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 3.65e-01 74.6% 37.0%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.13e-01 85.7% 43.3%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.67 55.0 5.79e-01 88.9% 100.0%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.67 50.0 4.12e-01 79.4% 87.2%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 48.0 3.38e-01 77.8% 68.8%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 3.89e-01 81.0% 40.4%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 5.01e-01 82.5% 78.8%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 41.0 4.63e-01 73.0% 83.3%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.66 54.0 4.90e-01 93.7% 84.3%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.10e-01 76.2% 51.1%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.36e-01 71.4% 69.7%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.17e-01 73.0% 59.3%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.94e-01 98.4% 77.6%
2cwqA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 55.0 4.44e-01 100.0% 86.5%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.63 43.0 3.84e-01 73.0% 61.5%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.63 45.0 3.50e-01 76.2% 66.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 53.0 4.55e-01 100.0% 79.6%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 3.85e-01 92.1% 59.1%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.74e-01 100.0% 83.7%
3m1mA03 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.59 51.0 4.31e-01 98.4% 75.5%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 3.75e-01 98.4% 61.0%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 49.0 3.47e-01 100.0% 60.6%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.56 38.0 2.64e-01 71.4% 27.2%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 46.0 3.78e-01 100.0% 52.6%
2wbiA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 38.0 3.28e-01 85.7% 85.6%
4jrrB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.13e-01 96.8% 56.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 60.0 5.83e-01 71.4% 64.3%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 60.0 6.41e-01 71.4% 81.8%
3947091 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.86 58.0 5.96e-01 74.6% 73.3%
4952807 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.84 60.0 5.64e-01 74.6% 64.0%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 59.0 5.84e-01 77.8% 70.8%
4060647 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.83 57.0 5.70e-01 71.4% 70.8%
3979166 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 61.0 5.84e-01 84.1% 68.6%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 59.0 6.43e-01 74.6% 94.0%
5080109 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.82 66.0 6.19e-01 87.3% 72.0%
3706139 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 56.0 6.20e-01 71.4% 90.0%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 56.0 5.57e-01 71.4% 69.2%
4139052 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 58.0 5.43e-01 77.8% 62.7%
139963 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 56.0 6.05e-01 92.1% 85.2%
4927516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 54.0 5.50e-01 71.4% 73.3%
4968313 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.79 63.0 5.80e-01 87.3% 67.5%
5018167 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.79 64.0 6.17e-01 88.9% 78.6%
4941605 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.78 48.0 5.75e-01 71.4% 100.0%
4955713 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 5.97e-01 82.5% 87.7%
5053505 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.77 52.0 5.71e-01 71.4% 88.0%
5003692 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.77 65.0 6.43e-01 93.7% 89.2%
4287153 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.76 53.0 5.45e-01 73.0% 85.0%
3452941 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 54.0 5.89e-01 74.6% 98.0%
5004314 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.76 64.0 6.01e-01 93.7% 77.3%
5070906 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 52.0 5.33e-01 71.4% 75.0%
4309654 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.75 51.0 5.46e-01 71.4% 81.8%
3163613 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 57.0 5.53e-01 84.1% 72.9%
3932988 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 52.0 5.51e-01 73.0% 89.1%
4575492 101.1.6.14 alpha arrays › HTH › HTH › TrpR › HTH_29 0.75 61.0 6.06e-01 93.7% 86.2%
3602631 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.74 51.0 4.72e-01 71.4% 57.5%
4970998 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.74 59.0 5.02e-01 85.7% 77.0%
5052144 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 52.0 5.48e-01 73.0% 83.6%
4980944 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 4.91e-01 77.8% 60.0%
5060354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 50.0 5.02e-01 73.0% 69.2%
3920862 101.1.1.221 alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 0.73 51.0 5.71e-01 73.0% 94.0%
3968864 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 58.0 5.44e-01 90.5% 70.7%
3589364 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.73 56.0 4.33e-01 82.5% 94.1%
4983713 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 5.03e-01 77.8% 68.0%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.72 49.0 5.21e-01 73.0% 85.5%
3295746 101.1.2.454 alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.72 52.0 4.96e-01 77.8% 69.3%
3927372 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 62.0 5.77e-01 100.0% 98.8%
4941224 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 4.69e-01 76.2% 61.3%
2496734 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 4.19e-01 85.7% 38.4%
1725514 101.42.1.1 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.70 46.0 4.52e-01 73.0% 61.8%
3943815 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.69 52.0 4.07e-01 81.0% 38.5%
3244751 101.1.2.461 alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 0.69 55.0 4.62e-01 85.7% 69.5%
4941116 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 4.81e-01 82.5% 66.3%
4996857 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.25e-01 82.5% 93.2%
1291586 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 50.0 3.89e-01 82.5% 41.0%
5076685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.60e-01 88.9% 61.1%
3944370 101.1.1.318 alpha arrays › HTH › HTH › Three-helical HTH › PF30335 0.65 57.0 5.57e-01 100.0% 87.1%
3250031 101.1.1.297 alpha arrays › HTH › HTH › Three-helical HTH › HTH_NPRL3 0.65 55.0 5.48e-01 95.2% 89.2%
5075830 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 3.72e-01 71.4% 41.8%
5013090 304.4.1.83 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 0.64 54.0 3.92e-01 95.2% 62.8%
3952778 101.1.2.574 alpha arrays › HTH › HTH › winged helix domain › PF26520 0.64 48.0 4.42e-01 84.1% 78.8%
5040755 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.63 57.0 4.76e-01 100.0% 79.0%
4998613 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.63 49.0 4.14e-01 82.5% 71.0%
4595970 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 53.0 5.44e-01 95.2% 100.0%
5012661 101.1.2.650 alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.62 51.0 4.87e-01 93.7% 77.3%
4927482 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.62 42.0 4.52e-01 73.0% 96.0%
3737312 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.61 49.0 4.70e-01 92.1% 88.0%
2628410 101.1.1.86 alpha arrays › HTH › HTH › Three-helical HTH › Raf1_HTH 0.60 51.0 5.05e-01 100.0% 93.9%
3942571 101.1.1.198 alpha arrays › HTH › HTH › Three-helical HTH › KorB 0.60 49.0 4.94e-01 92.1% 90.8%
4489802 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.59 51.0 5.09e-01 98.4% 93.8%