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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00191
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00191
Identity
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-38
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bmjA00 | 6.20.250.40 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.65 | 44.0 | 3.75e-01 | 88.6% | 40.3% |
| 4dolA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.64 | 47.0 | 3.14e-01 | 82.9% | 52.6% |
| 3hcsA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 43.0 | 3.96e-01 | 80.0% | 63.5% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.61 | 44.0 | 4.47e-01 | 100.0% | 79.4% |
| 7cymA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.59 | 42.0 | 3.08e-01 | 80.0% | 26.1% |
| 3u21A00 | 1.10.10.2430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain | 0.59 | 40.0 | 3.01e-01 | 74.3% | 25.7% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 39.0 | 2.25e-01 | 71.4% | 94.8% |
| 5bkeC00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.57 | 43.0 | 2.54e-01 | 85.7% | 34.6% |
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.57 | 40.0 | 3.40e-01 | 82.9% | 33.9% |
| 2hjhA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.57 | 44.0 | 3.10e-01 | 91.4% | 26.2% |
| 4zdtC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 39.0 | 3.44e-01 | 88.6% | 54.3% |
| 1q1aA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.56 | 48.0 | 3.41e-01 | 100.0% | 61.3% |
| 4chdA00 | 3.30.70.3510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 32.0 | 2.16e-01 | 77.1% | 12.6% |
| 3okyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 2.68e-01 | 80.0% | 40.7% |
| 2i50A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 39.0 | 2.79e-01 | 80.0% | 37.7% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 41.0 | 3.23e-01 | 100.0% | 77.3% |
| 1kmxA00 | 2.10.160.10 | Mainly Beta › Ribbon › Vascular Endothelial Growth Factor-165, Heparin-binding Domain › Vascular endothelial growth factor, heparin-binding domain | 0.51 | 34.0 | 2.98e-01 | 77.1% | 41.8% |
| 2cklA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 34.0 | 2.55e-01 | 100.0% | 24.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3435151 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 48.0 | 4.81e-01 | 100.0% | 77.1% |
| 4541485 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 47.0 | 4.14e-01 | 82.9% | 53.4% |
| 3262367 | 2.1.1.103 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PHA02142 | 0.64 | 52.0 | 3.51e-01 | 100.0% | 26.7% |
| 1548205 | 375.1.1.18 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 | 0.62 | 48.0 | 4.45e-01 | 88.6% | 76.1% |
| 3543125 | 4044.1.1.12 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › RH_dom | 0.61 | 43.0 | 3.96e-01 | 94.3% | 54.0% |
| 4648509 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.60 | 42.0 | 3.44e-01 | 88.6% | 45.6% |
| 4567922 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.58 | 40.0 | 3.43e-01 | 88.6% | 56.2% |
| 3318393 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.58 | 44.0 | 3.33e-01 | 82.9% | 78.9% |
| 3901454 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.57 | 40.0 | 2.57e-01 | 80.0% | 15.7% |
| 4503505 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.56 | 39.0 | 3.00e-01 | 88.6% | 42.5% |
| 3811663 | 376.1.1.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1 | 0.56 | 47.0 | 3.71e-01 | 100.0% | 70.0% |
| 3655538 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.55 | 45.0 | 3.54e-01 | 100.0% | 61.2% |
| 3738593 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.55 | 38.0 | 3.27e-01 | 85.7% | 41.3% |
| 3683169 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.55 | 37.0 | 2.86e-01 | 71.4% | 34.0% |
| 4266756 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.55 | 37.0 | 3.17e-01 | 88.6% | 42.4% |
| 4586910 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.54 | 37.0 | 3.27e-01 | 88.6% | 46.7% |
| 3187970 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 41.0 | 3.59e-01 | 91.4% | 68.3% |
| 3833400 | 376.1.1.63 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 | 0.53 | 40.0 | 2.82e-01 | 85.7% | 35.2% |
| 3614502 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 42.0 | 3.16e-01 | 94.3% | 34.7% |
| 3993660 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 39.0 | 3.08e-01 | 88.6% | 41.2% |
| 3365579 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.52 | 40.0 | 3.11e-01 | 91.4% | 43.2% |
| 3208844 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.51 | 39.0 | 3.38e-01 | 91.4% | 81.5% |
| 3778751 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.51 | 40.0 | 3.03e-01 | 100.0% | 34.8% |
| 3210561 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 3.43e-01 | 94.3% | 58.0% |
| 3900352 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.51 | 41.0 | 3.18e-01 | 100.0% | 66.3% |
| 3309865 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.51 | 40.0 | 3.68e-01 | 91.4% | 74.0% |
| 3669336 | 376.1.2.12 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_2 | 0.50 | 40.0 | 3.19e-01 | 100.0% | 60.0% |
| 4945028 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 41.0 | 3.35e-01 | 100.0% | 79.7% |
| 3491043 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.50 | 42.0 | 3.10e-01 | 100.0% | 57.1% |
D2
medium
residues 76-184
Domain cluster:
representative
D3
medium
residues 190-256