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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00215

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00215

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 45.0 4.39e-01 75.9% 67.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 46.0 4.41e-01 77.6% 73.1%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.63 45.0 3.26e-01 75.9% 58.9%
4pmwA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 46.0 4.15e-01 77.6% 66.7%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 3.92e-01 89.7% 60.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 43.0 3.64e-01 74.1% 96.2%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 2.94e-01 82.8% 21.8%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 53.0 4.80e-01 100.0% 79.3%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 43.0 4.28e-01 74.1% 77.0%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.72e-01 98.3% 93.8%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.04e-01 98.3% 55.9%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.17e-01 75.9% 71.2%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.53e-01 98.3% 79.5%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.63e-01 87.9% 98.0%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.59 40.0 3.73e-01 70.7% 82.4%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.59e-01 87.9% 96.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.59 50.0 3.89e-01 100.0% 64.7%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 40.0 3.21e-01 75.9% 89.2%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.27e-01 98.3% 65.9%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 49.0 4.03e-01 100.0% 78.6%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 47.0 3.72e-01 93.1% 48.8%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.02e-01 100.0% 74.3%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.57e-01 86.2% 82.9%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 47.0 3.67e-01 100.0% 90.5%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 43.0 4.39e-01 82.8% 90.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.51e-01 93.1% 94.6%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 43.0 4.47e-01 84.5% 94.2%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 47.0 3.80e-01 98.3% 77.4%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.57 47.0 3.39e-01 96.6% 60.8%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 39.0 3.17e-01 75.9% 87.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 41.0 4.39e-01 86.2% 97.9%
6oibA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 3.34e-01 89.7% 88.7%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 39.0 3.81e-01 79.3% 78.9%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.56 43.0 4.45e-01 96.6% 96.3%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.56 39.0 3.68e-01 74.1% 87.3%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 45.0 4.07e-01 98.3% 68.6%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.54 39.0 3.26e-01 79.3% 64.6%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 37.0 3.65e-01 74.1% 75.0%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.48e-01 75.9% 98.8%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.99e-01 81.0% 92.0%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 34.0 3.32e-01 70.7% 57.8%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.22e-01 100.0% 83.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.08e-01 94.8% 81.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.52 42.0 3.92e-01 98.3% 86.3%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.52 39.0 3.19e-01 86.2% 42.6%
3k5bA02 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.52 36.0 3.34e-01 81.0% 77.5%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 35.0 2.35e-01 70.7% 18.0%
2nvwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 2.53e-01 75.9% 69.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.81e-01 81.0% 95.8%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 41.0 2.82e-01 100.0% 97.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.26e-01 82.8% 100.0%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.33e-01 93.1% 92.7%
3280222 9.4.1.5 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF7586 0.66 57.0 5.06e-01 100.0% 97.6%
4943610 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.66 47.0 3.71e-01 77.6% 35.9%
5042477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.16e-01 82.8% 100.0%
1273080 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.64 50.0 3.81e-01 96.6% 34.7%
3764000 219.1.1.78 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 0.64 53.0 4.44e-01 94.8% 70.5%
5016556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.58e-01 94.8% 86.7%
3373462 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.64 47.0 3.48e-01 82.8% 29.4%
4149829 220.1.1.114 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF5673 0.63 45.0 4.20e-01 77.6% 69.3%
4989217 304.39.1.6 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_2nd 0.63 46.0 4.64e-01 84.5% 78.3%
4931302 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.63 43.0 4.55e-01 72.4% 92.0%
4937586 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 51.0 5.00e-01 96.6% 84.6%
3961546 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 52.0 5.04e-01 98.3% 86.2%
3266702 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 4.32e-01 89.7% 82.8%
4937178 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 51.0 5.01e-01 96.6% 84.6%
3597338 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 50.0 3.48e-01 91.4% 46.8%
4605764 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 55.0 4.64e-01 100.0% 89.5%
5040230 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 50.0 4.89e-01 98.3% 86.2%
4964421 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 50.0 4.86e-01 96.6% 86.2%
4950216 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.60 40.0 4.30e-01 75.9% 83.3%
3875237 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 2.65e-01 98.3% 6.3%
4305539 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 53.0 4.46e-01 100.0% 85.0%
3968842 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 50.0 3.89e-01 93.1% 43.8%
4224359 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 51.0 4.23e-01 100.0% 79.8%
3196827 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 42.0 3.95e-01 77.6% 77.3%
5001380 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.03e-01 82.8% 90.0%
4932588 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 49.0 4.76e-01 96.6% 86.2%
4251669 4.1.1.76 beta barrels › SH3 › SH3 › SH3 › NdhO 0.59 49.0 4.65e-01 94.8% 100.0%
5029920 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.59 39.0 3.81e-01 75.9% 61.5%
5028523 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.58 39.0 3.79e-01 75.9% 61.5%
3404643 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.55e-01 98.3% 94.3%
2029624 1148.1.1.1 a+b two layers › Cell wall binding protein cwp8 domain 2 › Cell wall binding protein cwp8 domain 2 › Cell wall binding protein cwp8 domain 2 › Cwp8_D2 0.57 47.0 4.35e-01 98.3% 87.8%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.72e-01 94.8% 98.3%
185067 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.57 47.0 3.72e-01 93.1% 49.2%
3550644 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.54e-01 86.2% 96.4%
3959903 243.18.1.1 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.57 44.0 3.11e-01 89.7% 38.5%
4656688 5.1.4.60 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Tectonin 0.57 45.0 3.05e-01 87.9% 27.3%
3994170 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.29e-01 94.8% 39.2%
4228229 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 50.0 4.19e-01 100.0% 82.0%
1408049 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.56 44.0 3.50e-01 93.1% 39.0%
3908594 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 44.0 2.77e-01 87.9% 37.4%
3169468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 2.76e-01 93.1% 28.4%
4612221 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.56 45.0 3.18e-01 94.8% 28.3%
3347499 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 41.0 3.99e-01 96.6% 71.4%
3477257 5.1.4.148 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR93 0.55 44.0 2.64e-01 94.8% 27.3%
4418620 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 41.0 2.29e-01 86.2% 6.5%
3172856 5.1.4.575 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.55 46.0 3.02e-01 98.3% 42.9%
4472709 3939.1.1.185 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › WD40, Beta-prop_NOL10_N 0.54 45.0 2.73e-01 94.8% 15.2%
3278159 2004.1.1.525 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B 0.54 43.0 2.71e-01 96.6% 19.7%
3671367 5.1.4.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.54 44.0 2.81e-01 96.6% 27.9%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 39.0 3.37e-01 86.2% 44.7%
5022923 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 45.0 4.06e-01 100.0% 80.0%
3644862 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 2.76e-01 96.6% 26.4%
3335750 5.1.10.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › Clathrin_propel 0.53 44.0 4.00e-01 98.3% 67.1%
3601544 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.61e-01 100.0% 58.4%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.53 44.0 3.20e-01 100.0% 96.2%
5072901 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 42.0 3.90e-01 94.8% 82.5%
3474420 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.52 42.0 3.31e-01 100.0% 90.7%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.52 36.0 2.56e-01 77.6% 45.1%
3596270 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.52 44.0 4.04e-01 100.0% 87.5%
None 0.51 42.0 2.64e-01 98.3% 26.7%