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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00243
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00243
Identity
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-35
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.70 | 48.0 | 3.69e-01 | 74.3% | 32.5% |
| 7jnfA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.68 | 50.0 | 3.29e-01 | 80.0% | 17.0% |
| 1tvgA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.66 | 47.0 | 3.28e-01 | 82.9% | 22.1% |
| 2vt1B00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.65 | 45.0 | 3.46e-01 | 74.3% | 32.1% |
| 1djsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 44.0 | 3.27e-01 | 82.9% | 24.5% |
| 6z0wA01 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.63 | 44.0 | 3.08e-01 | 74.3% | 22.8% |
| 3t7yA00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.62 | 43.0 | 3.18e-01 | 74.3% | 27.7% |
| 8hmcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 44.0 | 2.57e-01 | 77.1% | 8.5% |
| 3es1A01 | 2.20.70.150 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.61 | 43.0 | 4.24e-01 | 80.0% | 70.3% |
| 1tljB00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.58 | 41.0 | 2.65e-01 | 77.1% | 79.8% |
| 4iwxA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 38.0 | 2.88e-01 | 82.9% | 23.4% |
| 2dkhA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.54 | 39.0 | 2.85e-01 | 82.9% | 26.3% |
| 3rkxA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 36.0 | 2.39e-01 | 100.0% | 14.0% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 39.0 | 2.69e-01 | 100.0% | 78.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2393451 | 4104.1.1.1 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 | 0.70 | 49.0 | 3.59e-01 | 74.3% | 28.9% |
| 3478271 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.65 | 46.0 | 4.00e-01 | 82.9% | 87.7% |
| 3251814 | 10.32.1.241 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SAC9_GBDL_2nd | 0.64 | 45.0 | 2.91e-01 | 80.0% | 21.1% |
| 3958786 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.62 | 43.0 | 2.72e-01 | 74.3% | 12.0% |
| 4856110 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.62 | 44.0 | 3.04e-01 | 77.1% | 21.3% |
| 4889770 | 11.1.4.135 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CBM_48 | 0.61 | 45.0 | 3.29e-01 | 82.9% | 27.6% |
| 3594867 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.60 | 44.0 | 2.70e-01 | 74.3% | 82.4% |
| 3239633 | 389.3.1.1 ↗ | few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module › Ldl_recept_a | 0.58 | 40.0 | 3.79e-01 | 80.0% | 58.0% |
| None | — | 0.54 | 40.0 | 2.58e-01 | 85.7% | 16.8% | |
| 4013906 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.49e-01 | 71.4% | 55.6% |
| 4054500 | 601.7.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C | 0.52 | 38.0 | 2.17e-01 | 88.6% | 7.0% |
| 3261959 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 35.0 | 3.49e-01 | 71.4% | 96.0% |
| 3449678 | 11.1.1.214 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N | 0.51 | 40.0 | 3.33e-01 | 100.0% | 50.7% |
| 3495218 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.50 | 36.0 | 3.44e-01 | 94.3% | 86.0% |