←Back to structures

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00249

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00249

Identity

Kingdom:
phage

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-103
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.89 66.0 4.17e-01 78.2% 18.4%
1k8kF00 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.75 64.0 4.48e-01 92.7% 40.7%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.69 59.0 3.50e-01 94.5% 21.5%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.67 48.0 3.79e-01 78.2% 35.2%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 49.0 3.35e-01 87.3% 40.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253283 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.95 88.0 7.10e-01 98.2% 56.8%
3436926 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.95 89.0 7.90e-01 100.0% 77.0%
5056427 3843.1.1.38 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › T4SS_pilin 0.79 65.0 5.24e-01 96.4% 46.4%
3471522 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.76 53.0 4.46e-01 72.7% 52.2%