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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1XX__00317

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00317

Identity

Kingdom:: phage

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 63-152

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3pf7B00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.50	44.0	2.84e-01	100.0%	81.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605544	1189.1.1.0 ↗	alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor	0.55	41.0	2.68e-01	78.9%	91.2%
3321868	1.1.9.4 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA	0.50	37.0	2.71e-01	90.0%	29.4%
4408497	2004.1.1.130 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NACHT	0.50	43.0	3.17e-01	94.4%	60.4%

D2 medium residues 1-57_171-200

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5utkA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.61	36.0	3.76e-01	80.5%	62.7%
2hw4A01	3.50.20.20	Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus	0.59	48.0	4.49e-01	89.7%	91.8%
2z3gB00	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.58	40.0	3.55e-01	70.1%	53.5%
3liuA01	2.60.40.3160	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.57	42.0	3.83e-01	81.6%	58.5%
4e6zA02	3.40.1350.100	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.55	39.0	3.87e-01	78.2%	71.9%
3fgeA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.53	40.0	3.34e-01	85.1%	52.3%
1d0nA05	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.52	36.0	3.55e-01	75.9%	65.6%
2vqaA02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.52	38.0	3.02e-01	77.0%	65.5%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4106367	379.1.1.1 ↗	few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1	0.60	33.0	3.95e-01	79.3%	86.8%
3390562	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.59	39.0	4.27e-01	88.5%	84.3%
3666940	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.58	42.0	3.82e-01	77.0%	58.3%
3486125	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.57	37.0	3.55e-01	80.5%	57.0%
3942510	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.57	44.0	4.35e-01	86.2%	94.7%
3705856	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.56	44.0	3.12e-01	87.4%	62.7%
5075402	210.1.3.3 ↗	a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4	0.56	44.0	3.17e-01	89.7%	31.6%
4996322	821.1.1.14 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797	0.55	42.0	4.05e-01	83.9%	81.9%
1175478	4076.2.1.1 ↗	a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH	0.55	37.0	4.04e-01	87.4%	84.7%
5047234	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.54	46.0	4.52e-01	94.3%	100.0%
4623707	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.54	42.0	4.10e-01	86.2%	98.9%
5047755	2492.1.1.7 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ	0.51	41.0	3.56e-01	89.7%	75.0%
4637265	2492.1.1.7 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ	0.50	41.0	3.46e-01	89.7%	68.7%
3688677	4121.1.1.7 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616	0.50	39.0	2.63e-01	86.2%	55.8%

D3 medium residues 201-251

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3um7A03	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.72	51.0	4.01e-01	74.5%	73.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3609047	630.1.1.0 ↗	a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain	0.74	56.0	3.71e-01	80.4%	32.4%
3770213	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.72	56.0	3.35e-01	84.3%	79.1%