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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00332

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00332

Identity

Kingdom:
phage

Quality

68.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-107
PDB
Domain cluster: rep: H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00077__D27-78
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 5.77e-01 100.0% 72.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.73 65.0 6.02e-01 100.0% 88.9%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 5.75e-01 100.0% 79.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 5.50e-01 100.0% 66.3%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 4.80e-01 100.0% 52.8%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.70 56.0 5.34e-01 100.0% 76.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.54e-01 100.0% 83.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.23e-01 100.0% 79.2%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 59.0 5.43e-01 100.0% 89.1%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.09e-01 100.0% 82.7%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.68e-01 100.0% 98.2%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.11e-01 100.0% 76.4%
2n88A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 45.0 4.36e-01 74.0% 72.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 58.0 5.52e-01 100.0% 98.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.84e-01 100.0% 75.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.34e-01 100.0% 90.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.17e-01 100.0% 83.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.05e-01 100.0% 79.4%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 56.0 5.39e-01 100.0% 93.0%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.09e-01 100.0% 93.8%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.24e-01 100.0% 63.0%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.69e-01 100.0% 92.1%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.60 39.0 3.21e-01 92.0% 33.7%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.82e-01 100.0% 91.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.62e-01 100.0% 89.7%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 3.94e-01 100.0% 56.1%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 45.0 4.31e-01 96.0% 78.1%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.57e-01 100.0% 94.7%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 46.0 4.37e-01 100.0% 96.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.48e-01 90.0% 89.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.36e-01 100.0% 91.9%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 39.0 3.31e-01 80.0% 55.3%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.42e-01 100.0% 96.2%
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 2.83e-01 98.0% 53.1%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 40.0 2.59e-01 96.0% 24.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3991244 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.79 63.0 6.64e-01 100.0% 95.6%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.78 60.0 4.95e-01 100.0% 46.7%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.22e-01 100.0% 84.6%
4116754 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.77 58.0 6.13e-01 100.0% 91.1%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 62.0 5.89e-01 100.0% 90.0%
3926017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.74e-01 100.0% 85.5%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.95e-01 100.0% 85.0%
3411714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.42e-01 100.0% 68.6%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 59.0 5.36e-01 100.0% 78.6%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 56.0 4.57e-01 100.0% 48.0%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.24e-01 100.0% 84.6%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 59.0 5.42e-01 100.0% 83.1%
3914833 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 58.0 5.20e-01 100.0% 80.0%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 59.0 5.01e-01 100.0% 67.5%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 54.0 4.58e-01 100.0% 54.4%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 47.0 4.69e-01 100.0% 74.5%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 57.0 5.43e-01 98.0% 96.6%
3261986 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 57.0 5.41e-01 100.0% 91.5%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 57.0 4.71e-01 100.0% 67.8%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.64 53.0 4.30e-01 100.0% 53.7%
3243949 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 57.0 5.35e-01 100.0% 93.3%
3525376 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 56.0 5.13e-01 100.0% 86.2%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.98e-01 100.0% 82.9%
3904253 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 55.0 5.11e-01 100.0% 86.2%
3480204 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 55.0 5.10e-01 100.0% 89.2%
5042797 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 54.0 5.11e-01 100.0% 81.7%
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.50e-01 100.0% 93.3%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 46.0 4.16e-01 100.0% 66.3%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 47.0 4.61e-01 98.0% 96.4%
3900208 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 46.0 4.40e-01 100.0% 84.4%
3270547 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 46.0 4.39e-01 100.0% 83.1%
3366511 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 47.0 4.40e-01 100.0% 81.5%
3214149 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 45.0 4.23e-01 96.0% 80.0%
3926701 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 44.0 4.18e-01 100.0% 79.4%
5004462 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.55 37.0 3.17e-01 70.0% 85.6%