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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00338
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00338
Identity
- Kingdom:
- phage
Quality
69.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-92
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a5pB01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.58 | 41.0 | 3.71e-01 | 73.3% | 97.6% |
| 2x49A01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.57 | 39.0 | 3.88e-01 | 71.1% | 91.7% |
| 1ekzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 34.0 | 3.68e-01 | 72.2% | 73.7% |
| 3k2yA00 | 3.30.70.2330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.31e-01 | 73.3% | 59.2% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 37.0 | 3.73e-01 | 78.9% | 93.6% |
| 3h49B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 35.0 | 2.44e-01 | 72.2% | 44.5% |
| 4dixA02 | 2.30.29.140 | Mainly Beta › Roll › PH-domain like › | 0.50 | 38.0 | 3.48e-01 | 84.4% | 59.2% |
| 3gw6A02 | 1.20.5.1240 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Endo-n-acetylneuraminidase | 0.50 | 26.0 | 3.24e-01 | 75.6% | 84.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3705941 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 39.0 | 4.14e-01 | 73.3% | 73.8% |
| 3260746 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.60 | 32.0 | 4.11e-01 | 71.1% | 94.0% |
| 3832680 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.55 | 40.0 | 3.47e-01 | 76.7% | 82.6% |
| 3226617 | 2.6.1.5 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › PF30352 | 0.53 | 32.0 | 2.89e-01 | 78.9% | 40.0% |
| 3516025 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 43.0 | 4.17e-01 | 91.1% | 84.8% |
| 4483119 | 865.1.1.1 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 | 0.53 | 36.0 | 2.78e-01 | 70.0% | 91.5% |
| 3838862 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 36.0 | 2.98e-01 | 71.1% | 76.1% |
| 3494554 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 33.0 | 3.28e-01 | 74.4% | 63.2% |
D2
high
residues 96-156