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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00366
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00366
Identity
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-59
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6rxpA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.63 | 46.0 | 3.97e-01 | 89.7% | 48.4% |
| 1m2gA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.60 | 44.0 | 3.78e-01 | 89.7% | 49.5% |
| 2xb4A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 44.0 | 2.93e-01 | 82.8% | 70.9% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.57 | 42.0 | 3.05e-01 | 81.0% | 28.7% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 2.81e-01 | 82.8% | 70.5% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 39.0 | 2.72e-01 | 89.7% | 68.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927062 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 44.0 | 4.91e-01 | 74.1% | 80.0% |
| 4070233 | 375.1.1.6 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L40e | 0.72 | 45.0 | 4.81e-01 | 79.3% | 74.0% |
| 5052663 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 47.0 | 5.37e-01 | 74.1% | 100.0% |
| 5047644 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 45.0 | 4.95e-01 | 79.3% | 84.4% |
| 4980022 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 44.0 | 4.70e-01 | 77.6% | 86.0% |
| 4668224 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 39.0 | 4.26e-01 | 75.9% | 82.2% |
| 3317467 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.61 | 42.0 | 4.37e-01 | 82.8% | 78.2% |
| 4518612 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.58 | 50.0 | 3.28e-01 | 96.6% | 26.3% |
| 3627894 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.58 | 42.0 | 3.52e-01 | 77.6% | 99.0% |
| 4579287 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.57 | 42.0 | 2.61e-01 | 79.3% | 22.6% |
| 4587872 | 375.1.1.270 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-DPOE | 0.56 | 40.0 | 3.19e-01 | 87.9% | 36.7% |
| 4241167 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.56 | 42.0 | 3.07e-01 | 86.2% | 28.8% |
| 4988770 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.56 | 45.0 | 3.27e-01 | 91.4% | 62.3% |
| 5064846 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.55 | 43.0 | 3.03e-01 | 87.9% | 69.6% |
| 3803639 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.54 | 41.0 | 4.00e-01 | 87.9% | 75.4% |
| 4274063 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.54 | 38.0 | 3.13e-01 | 89.7% | 37.5% |
| 4176764 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.53 | 44.0 | 3.02e-01 | 93.1% | 72.6% |
| 4116298 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.53 | 37.0 | 2.99e-01 | 89.7% | 34.6% |
| 5034201 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.52 | 37.0 | 2.95e-01 | 89.7% | 34.6% |
| 3244635 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 40.0 | 3.41e-01 | 89.7% | 62.9% |
| 3810348 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.51 | 38.0 | 3.00e-01 | 84.5% | 53.6% |
| 5046600 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.50 | 35.0 | 3.03e-01 | 74.1% | 73.3% |