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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00401
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00401
Identity
- Kingdom:
- phage
Quality
63.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-60
D2
medium
residues 105-209
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00132__D64-142
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nowA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.77 | 70.0 | 4.79e-01 | 100.0% | 40.8% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.74 | 68.0 | 4.91e-01 | 100.0% | 39.3% |
| 3lpzA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.73 | 66.0 | 4.74e-01 | 100.0% | 37.7% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.72 | 65.0 | 5.72e-01 | 100.0% | 70.5% |
| 2qk2A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.71 | 64.0 | 4.96e-01 | 100.0% | 48.3% |
| 4qmhA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.71 | 63.0 | 4.90e-01 | 100.0% | 47.9% |
| 4leuA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 61.0 | 5.07e-01 | 100.0% | 54.4% |
| 1n4kA02 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.71 | 58.0 | 5.24e-01 | 90.5% | 88.5% |
| 1wy6A00 | 1.25.40.350 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 57.0 | 5.00e-01 | 100.0% | 58.5% |
| 4f5cA04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.68 | 60.0 | 4.29e-01 | 100.0% | 70.8% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.67 | 55.0 | 5.07e-01 | 89.5% | 70.8% |
| 2p58C00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 47.0 | 4.66e-01 | 89.5% | 72.3% |
| 5cl3A00 | 1.25.10.90 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.63 | 57.0 | 4.41e-01 | 100.0% | 48.1% |
| 2b1eA02 | 1.20.1310.30 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › | 0.61 | 51.0 | 4.57e-01 | 93.3% | 100.0% |
| 3kraC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 48.0 | 3.61e-01 | 85.7% | 45.8% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 46.0 | 4.69e-01 | 92.4% | 82.2% |
| 4i9cA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 49.0 | 3.90e-01 | 88.6% | 59.3% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.60 | 46.0 | 3.84e-01 | 82.9% | 66.0% |
| 3fr3B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 47.0 | 4.58e-01 | 87.6% | 95.7% |
| 1a17A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 44.0 | 3.88e-01 | 88.6% | 54.1% |
| 4wnfA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 51.0 | 3.87e-01 | 100.0% | 48.2% |
| 3gw4A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 50.0 | 4.13e-01 | 98.1% | 55.2% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 50.0 | 4.82e-01 | 98.1% | 86.6% |
| 7cjsB01 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.56 | 44.0 | 3.60e-01 | 86.7% | 86.9% |
| 1w3bB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 45.0 | 3.14e-01 | 99.0% | 25.0% |
| 4p3gD00 | 1.10.3450.40 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain | 0.56 | 48.0 | 3.93e-01 | 94.3% | 71.3% |
| 3ro3A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 49.0 | 4.29e-01 | 98.1% | 64.8% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.55 | 35.0 | 3.79e-01 | 98.1% | 75.3% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.55 | 41.0 | 3.96e-01 | 99.0% | 67.8% |
| 7xxiA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 44.0 | 3.26e-01 | 88.6% | 73.1% |
| 2ppqA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 44.0 | 3.54e-01 | 90.5% | 98.6% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 46.0 | 3.82e-01 | 97.1% | 79.3% |
| 3fflA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 45.0 | 4.26e-01 | 99.0% | 81.0% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 41.0 | 3.46e-01 | 83.8% | 87.2% |
| 6dewA01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.67e-01 | 97.1% | 82.6% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719826 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.82 | 74.0 | 5.22e-01 | 97.1% | 38.7% |
| 3836238 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.76 | 69.0 | 4.92e-01 | 100.0% | 44.8% |
| 3723242 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.75 | 68.0 | 4.79e-01 | 98.1% | 36.1% |
| 3168940 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.74 | 68.0 | 4.81e-01 | 100.0% | 35.8% |
| 3492117 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 67.0 | 4.82e-01 | 100.0% | 40.0% |
| 3573562 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 67.0 | 4.42e-01 | 100.0% | 27.1% |
| 3477991 | 109.4.1.285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSMD12-CSN4_N | 0.73 | 66.0 | 4.79e-01 | 100.0% | 37.9% |
| 3880895 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.72 | 65.0 | 4.67e-01 | 100.0% | 37.7% |
| 3874523 | 109.4.1.1400 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27614, PF30377 | 0.71 | 64.0 | 4.10e-01 | 100.0% | 22.2% |
| 3492535 | 109.4.1.2754 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14, TPR_19, HAT_PRP39_N, PF29376 | 0.70 | 63.0 | 4.08e-01 | 100.0% | 22.6% |
| 3639124 | 109.4.1.44 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 | 0.70 | 62.0 | 4.73e-01 | 100.0% | 46.3% |
| 3419521 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 60.0 | 5.88e-01 | 100.0% | 87.0% |
| 3626611 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 63.0 | 4.20e-01 | 100.0% | 26.7% |
| 5053125 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 61.0 | 4.37e-01 | 100.0% | 36.3% |
| 4997858 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.68 | 47.0 | 4.03e-01 | 72.4% | 97.6% |
| 5077941 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.67 | 59.0 | 4.42e-01 | 100.0% | 40.0% |
| 3268516 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 56.0 | 4.66e-01 | 89.5% | 57.0% |
| None | — | 0.67 | 59.0 | 4.33e-01 | 100.0% | 39.0% | |
| 4979301 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.66 | 59.0 | 4.97e-01 | 100.0% | 62.2% |
| 3613990 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 57.0 | 3.35e-01 | 100.0% | 12.0% |
| 3644261 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.65 | 59.0 | 5.67e-01 | 100.0% | 88.3% |
| 3346324 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 54.0 | 4.64e-01 | 91.4% | 58.7% |
| 5075578 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 54.0 | 3.99e-01 | 100.0% | 46.6% |
| 5071225 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 49.0 | 4.86e-01 | 90.5% | 93.0% |
| 5050101 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.61 | 51.0 | 4.46e-01 | 92.4% | 63.1% |
| 3717421 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.61 | 52.0 | 3.57e-01 | 93.3% | 28.4% |
| 5022047 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.60 | 53.0 | 4.05e-01 | 98.1% | 44.5% |
| 3191474 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 53.0 | 3.69e-01 | 100.0% | 38.4% |
| 3885522 | 109.4.1.1286 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 | 0.60 | 51.0 | 4.61e-01 | 94.3% | 72.4% |
| 3762489 | 109.4.1.777 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 50.0 | 3.57e-01 | 93.3% | 29.9% |
| 4628636 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.60 | 42.0 | 3.17e-01 | 72.4% | 96.9% |
| 3391650 | 109.4.1.1286 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 | 0.59 | 50.0 | 3.20e-01 | 93.3% | 19.8% |
| 3651383 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.59 | 48.0 | 3.83e-01 | 98.1% | 41.3% |
| 3827125 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 49.0 | 4.14e-01 | 100.0% | 53.9% |
| 3288978 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.58 | 47.0 | 4.97e-01 | 92.4% | 97.8% |
| 3585594 | 109.4.1.1286 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 | 0.58 | 52.0 | 4.00e-01 | 100.0% | 64.1% |
| 3607001 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 46.0 | 3.40e-01 | 85.7% | 69.1% |
| 4960356 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 4.08e-01 | 98.1% | 48.8% |
| 3661708 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.58 | 48.0 | 4.26e-01 | 98.1% | 60.6% |
| 3678121 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 48.0 | 4.13e-01 | 98.1% | 57.1% |
| 3504179 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.56 | 49.0 | 4.76e-01 | 98.1% | 87.5% |
| 148459 | 109.4.1.2438 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_7, TPR_8, TPR_12 | 0.56 | 49.0 | 4.29e-01 | 98.1% | 64.8% |
| 3290337 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 4.59e-01 | 98.1% | 86.1% |
| 3591852 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 3.88e-01 | 96.2% | 84.0% |
| 3268439 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 3.91e-01 | 96.2% | 59.5% |
| 3838188 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.53 | 47.0 | 3.61e-01 | 100.0% | 63.6% |
| 3343408 | 109.4.1.1411 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30303 | 0.52 | 44.0 | 4.27e-01 | 100.0% | 85.8% |