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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00476

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00476

Identity

Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-53
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.90 77.0 6.31e-01 100.0% 54.4%
3apzA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.90 81.0 4.86e-01 96.2% 17.1%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.88 80.0 7.52e-01 100.0% 95.3%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.88 80.0 6.19e-01 100.0% 58.2%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.88 80.0 6.92e-01 100.0% 98.7%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 78.0 7.56e-01 96.2% 94.8%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.87 79.0 6.36e-01 100.0% 54.1%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 76.0 7.27e-01 100.0% 90.3%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 74.0 7.03e-01 96.2% 93.5%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.85 76.0 6.29e-01 100.0% 69.2%
1qu7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.84 74.0 4.82e-01 100.0% 25.6%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.83 71.0 6.21e-01 96.2% 76.5%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 65.0 6.74e-01 90.6% 91.8%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 74.0 5.52e-01 100.0% 45.4%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 66.0 6.25e-01 100.0% 73.4%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 72.0 4.89e-01 98.1% 28.5%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.82 68.0 7.08e-01 100.0% 100.0%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 67.0 6.00e-01 100.0% 64.9%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.81 71.0 4.95e-01 100.0% 30.6%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 73.0 6.87e-01 100.0% 100.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 70.0 6.84e-01 98.1% 100.0%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.80 70.0 6.46e-01 98.1% 98.5%
4cj0A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.80 62.0 3.60e-01 96.2% 10.3%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.80 71.0 6.13e-01 100.0% 65.1%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.80 69.0 6.15e-01 96.2% 74.3%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.80 69.0 6.05e-01 100.0% 71.6%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.78 68.0 6.64e-01 100.0% 98.3%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.78 70.0 6.69e-01 98.1% 95.1%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.78 69.0 5.00e-01 100.0% 40.7%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 66.0 5.62e-01 100.0% 72.8%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 63.0 5.76e-01 92.5% 68.5%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.78 64.0 5.44e-01 100.0% 56.2%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.77 66.0 5.68e-01 100.0% 61.4%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.77 66.0 6.21e-01 100.0% 86.4%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 64.0 5.82e-01 100.0% 68.4%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.76 67.0 5.07e-01 100.0% 78.6%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.76 67.0 5.39e-01 100.0% 53.5%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.75 64.0 6.20e-01 100.0% 95.1%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 62.0 5.77e-01 100.0% 74.6%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 61.0 5.11e-01 98.1% 70.4%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.74 63.0 5.80e-01 98.1% 74.3%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.74 62.0 5.18e-01 100.0% 53.5%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.74 59.0 5.41e-01 96.2% 67.6%
3wmeA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.74 62.0 3.85e-01 100.0% 24.1%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 63.0 6.14e-01 100.0% 91.7%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.73 57.0 5.56e-01 90.6% 85.2%
1lqsL01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.73 62.0 5.09e-01 96.2% 97.0%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 64.0 4.56e-01 100.0% 76.9%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.72 57.0 4.88e-01 90.6% 71.1%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 58.0 4.71e-01 100.0% 46.2%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 62.0 4.84e-01 96.2% 75.7%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.71 59.0 5.08e-01 100.0% 59.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.71 56.0 4.93e-01 86.8% 57.7%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 56.0 3.88e-01 86.8% 29.9%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.70 58.0 4.50e-01 98.1% 78.3%
3nkuA00 1.10.357.170 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.70 60.0 4.23e-01 100.0% 31.2%
3gzkA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.69 52.0 3.06e-01 84.9% 10.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.67 59.0 5.55e-01 100.0% 96.9%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.67 55.0 4.86e-01 100.0% 82.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 54.0 4.50e-01 100.0% 50.0%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.63 53.0 3.67e-01 96.2% 89.5%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956942 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.91 83.0 6.15e-01 100.0% 42.4%
2503462 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.88 76.0 6.21e-01 98.1% 53.2%
5057918 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.88 80.0 4.79e-01 100.0% 45.9%
3969893 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.88 79.0 7.38e-01 100.0% 81.5%
3988454 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.87 79.0 7.14e-01 100.0% 85.7%
3195418 192.8.1.376 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RRP36 0.87 79.0 6.44e-01 100.0% 55.8%
3575264 604.12.1.61 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like 0.86 77.0 5.92e-01 100.0% 47.8%
3240682 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.85 76.0 5.96e-01 100.0% 49.1%
3288637 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.85 77.0 6.79e-01 100.0% 86.7%
4601944 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.85 75.0 6.69e-01 100.0% 72.0%
4380216 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 75.0 5.38e-01 100.0% 38.0%
3218199 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.84 75.0 6.29e-01 100.0% 66.7%
3294437 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.84 76.0 6.57e-01 100.0% 78.8%
3281127 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.84 74.0 6.22e-01 100.0% 58.9%
4928200 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.83 70.0 4.92e-01 100.0% 30.9%
3278180 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.82 71.0 4.01e-01 100.0% 9.3%
3593736 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.82 72.0 5.85e-01 100.0% 54.0%
4030667 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 72.0 6.05e-01 100.0% 62.2%
4146694 192.29.1.277 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin 0.82 73.0 6.80e-01 100.0% 90.8%
3543042 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.81 72.0 6.14e-01 100.0% 62.4%
3991817 109.4.1.1159 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IFT122 0.81 70.0 4.17e-01 96.2% 14.7%
3445040 3826.1.1.53 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Rx_N 0.80 71.0 6.05e-01 98.1% 61.2%
4473366 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 68.0 6.16e-01 100.0% 70.7%
3938995 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.80 70.0 5.92e-01 100.0% 60.0%
3718969 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.80 68.0 4.76e-01 98.1% 30.3%
3410365 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.79 68.0 4.10e-01 100.0% 14.5%
4180833 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.79 68.0 4.35e-01 100.0% 20.4%
4033472 4177.1.1.22 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › LXG 0.79 68.0 4.56e-01 100.0% 38.1%
3917098 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.79 70.0 4.00e-01 100.0% 10.1%
3258825 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.78 68.0 4.05e-01 100.0% 14.9%
3740547 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.75 64.0 5.14e-01 100.0% 79.1%
3837404 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 61.0 4.76e-01 100.0% 42.3%
3714244 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.69 58.0 5.63e-01 100.0% 90.0%
3463858 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.68 57.0 4.77e-01 100.0% 70.0%
3597348 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 49.0 3.01e-01 92.5% 14.8%
3973864 6026.1.1.2 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › GlpM 0.53 45.0 3.66e-01 100.0% 52.3%