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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00508
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00508
Identity
- Kingdom:
- phage
Quality
57.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-178
Domain cluster:
rep: MT310852.1__QJD49729.1__SEA_CLUBPENGUIN_5__00005__D26-178
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 47.8 | 2.30e-12 | 87.6% | 65.1% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.85 | 81.0 | 7.72e-01 | 99.4% | 97.3% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.83 | 79.0 | 7.20e-01 | 99.4% | 96.6% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 78.0 | 7.39e-01 | 99.4% | 98.4% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 77.0 | 7.29e-01 | 99.4% | 97.9% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 75.0 | 7.47e-01 | 98.8% | 98.8% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 76.0 | 7.44e-01 | 99.4% | 97.7% |
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.77 | 73.0 | 6.96e-01 | 99.4% | 95.0% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 21.0 | 3.05e-01 | 89.4% | 80.3% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3680289 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.89 | 84.0 | 7.82e-01 | 98.8% | 99.5% |
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.85 | 81.0 | 7.72e-01 | 99.4% | 97.3% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.85 | 81.0 | 7.63e-01 | 99.4% | 97.9% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.85 | 80.0 | 7.65e-01 | 98.1% | 98.3% |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.84 | 81.0 | 7.63e-01 | 99.4% | 98.9% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 80.0 | 7.71e-01 | 99.4% | 98.3% |
| None | — | 0.84 | 80.0 | 7.66e-01 | 99.4% | 98.9% | |
| 4946449 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 7.51e-01 | 99.4% | 98.4% |
| 5026546 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 79.0 | 7.56e-01 | 98.8% | 99.4% |
| None | — | 0.83 | 79.0 | 7.69e-01 | 99.4% | 100.0% | |
| 3253597 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 79.0 | 7.33e-01 | 99.4% | 99.0% |
| 3464521 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 78.0 | 6.94e-01 | 98.8% | 95.0% |
| 1869530 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 79.0 | 7.07e-01 | 99.4% | 93.8% |
| 3698720 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 79.0 | 6.94e-01 | 100.0% | 88.3% |
| 3821993 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.83 | 79.0 | 6.59e-01 | 100.0% | 80.2% |
| 1117634 | 264.1.1.8 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg | 0.83 | 79.0 | 6.83e-01 | 99.4% | 86.1% |
| 5000045 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 79.0 | 7.45e-01 | 99.4% | 97.3% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 78.0 | 7.43e-01 | 99.4% | 97.8% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 77.0 | 7.42e-01 | 98.1% | 99.4% |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.82 | 79.0 | 7.29e-01 | 100.0% | 97.9% |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.55e-01 | 99.4% | 98.9% |
| None | — | 0.82 | 78.0 | 7.39e-01 | 99.4% | 98.4% | |
| 4932664 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 79.0 | 7.48e-01 | 100.0% | 98.4% |
| 4026533 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 78.0 | 7.14e-01 | 99.4% | 97.0% |
| 4948034 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.36e-01 | 99.4% | 97.3% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 77.0 | 7.37e-01 | 98.1% | 97.8% |
| None | — | 0.82 | 72.0 | 7.11e-01 | 91.9% | 99.4% | |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 77.0 | 7.27e-01 | 99.4% | 97.3% |
| 4949121 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.48e-01 | 100.0% | 99.4% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.37e-01 | 99.4% | 98.9% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.82 | 77.0 | 7.32e-01 | 99.4% | 97.3% |
| None | — | 0.81 | 77.0 | 7.31e-01 | 99.4% | 98.4% | |
| 5030633 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.26e-01 | 99.4% | 96.8% |
| 4967857 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 74.0 | 7.12e-01 | 95.7% | 97.8% |
| 3982264 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.49e-01 | 99.4% | 97.1% |
| 3937447 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.81 | 77.0 | 6.98e-01 | 100.0% | 96.6% |
| 4957217 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.40e-01 | 99.4% | 98.3% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 7.29e-01 | 99.4% | 97.3% |
| 1953031 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 7.45e-01 | 99.4% | 96.6% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 75.0 | 7.11e-01 | 96.9% | 94.6% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 76.0 | 7.28e-01 | 99.4% | 98.9% |
| 1549209 | 264.1.1.2 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A | 0.81 | 67.0 | 7.08e-01 | 99.4% | 96.5% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 76.0 | 7.25e-01 | 99.4% | 97.3% |
| 4937535 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.44e-01 | 99.4% | 100.0% |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 76.0 | 7.24e-01 | 99.4% | 97.8% |
| 4979619 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 71.0 | 6.98e-01 | 91.9% | 98.8% |
| 3616225 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 76.0 | 6.77e-01 | 100.0% | 93.2% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 75.0 | 7.25e-01 | 98.8% | 99.4% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 75.0 | 7.18e-01 | 99.4% | 99.5% |
| 4929565 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 76.0 | 7.30e-01 | 99.4% | 98.9% |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 75.0 | 7.22e-01 | 98.8% | 98.9% |
| 5055911 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 76.0 | 7.28e-01 | 99.4% | 98.9% |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 75.0 | 7.21e-01 | 99.4% | 99.4% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 75.0 | 7.28e-01 | 99.4% | 98.3% |
| 3270425 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 75.0 | 6.95e-01 | 99.4% | 99.0% |
| 3995136 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 61.0 | 6.33e-01 | 78.9% | 98.7% |
| 3735878 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 75.0 | 6.96e-01 | 100.0% | 98.5% |
| 5058094 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 75.0 | 7.25e-01 | 99.4% | 100.0% |
| 4965442 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 73.0 | 7.38e-01 | 98.1% | 100.0% |
| 3739681 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 74.0 | 6.79e-01 | 99.4% | 98.5% |
| 1736491 | 264.1.1.2 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A | 0.78 | 67.0 | 7.05e-01 | 95.0% | 98.0% |
| 4991838 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 62.0 | 6.80e-01 | 85.1% | 98.5% |
| 5063905 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 73.0 | 7.21e-01 | 99.4% | 98.8% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 71.0 | 7.07e-01 | 99.4% | 97.6% |
| 5041112 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 23.0 | 3.31e-01 | 73.9% | 78.6% |
| 5001168 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.53 | 25.0 | 3.12e-01 | 91.9% | 69.0% |
| 2502534 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.53 | 25.0 | 3.20e-01 | 73.3% | 75.9% |
| 4012257 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 26.0 | 3.06e-01 | 92.5% | 62.3% |
D2
medium
residues 181-308
D3
medium
residues 309-412