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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00515
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00515
Identity
- Kingdom:
- phage
Quality
64.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-66
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.68 | 46.0 | 3.59e-01 | 86.7% | 34.7% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.61 | 37.0 | 3.02e-01 | 90.0% | 33.0% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.59 | 40.0 | 3.61e-01 | 93.3% | 51.2% |
| 2pusA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 38.0 | 4.02e-01 | 90.0% | 77.4% |
| 1x3aA00 | 1.10.3970.10 | Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain | 0.54 | 43.0 | 3.68e-01 | 90.0% | 77.0% |
| 1r4oA00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.53 | 40.0 | 3.70e-01 | 83.3% | 83.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289858 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.68 | 38.0 | 2.72e-01 | 90.0% | 18.3% |
| 4807989 | 4982.2.1.0 ↗ | alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain | 0.64 | 47.0 | 4.63e-01 | 91.7% | 72.7% |
| 4126680 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.58 | 45.0 | 2.77e-01 | 86.7% | 31.3% |
| 3925029 | 377.1.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 | 0.55 | 41.0 | 3.61e-01 | 81.7% | 66.3% |
| 3992222 | 377.1.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 | 0.55 | 41.0 | 3.54e-01 | 83.3% | 78.1% |
| 3244669 | 377.1.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 | 0.54 | 40.0 | 3.52e-01 | 83.3% | 66.0% |
| 3303417 | 376.1.1.26 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_4 | 0.54 | 39.0 | 4.01e-01 | 78.3% | 89.1% |
| 3233597 | 377.1.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 | 0.51 | 38.0 | 3.53e-01 | 95.0% | 63.7% |