Back to structures

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00551

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00551

Identity

Kingdom:
phage

Quality

65.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 383-512
PDB
D2 medium residues 145-223
PDB
Domain cluster: representative
D3 medium residues 228-288
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 55.0 4.97e-01 73.8% 67.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.77 54.0 5.48e-01 73.8% 85.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 55.0 5.15e-01 75.4% 89.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 55.0 5.57e-01 75.4% 89.8%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.78e-01 75.4% 90.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.70e-01 73.8% 90.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.74 56.0 4.23e-01 80.3% 36.9%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.25e-01 70.5% 98.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.05e-01 77.0% 75.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 48.0 5.32e-01 72.1% 93.8%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 62.0 5.38e-01 100.0% 93.7%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.46e-01 77.0% 94.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.18e-01 77.0% 98.3%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.70 52.0 4.13e-01 80.3% 48.4%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 4.98e-01 72.1% 83.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 48.0 4.40e-01 75.4% 73.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.52e-01 75.4% 65.8%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 47.0 4.95e-01 75.4% 92.6%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 41.0 3.84e-01 78.7% 52.1%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 3.85e-01 78.7% 50.4%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 48.0 3.72e-01 80.3% 96.4%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 4.16e-01 70.5% 98.6%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.64 54.0 5.29e-01 93.4% 90.9%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.63 54.0 3.59e-01 100.0% 58.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.76e-01 80.3% 96.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.30e-01 75.4% 87.1%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 44.0 3.50e-01 75.4% 95.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.44e-01 88.5% 85.5%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.41e-01 73.8% 90.9%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 42.0 3.33e-01 75.4% 99.3%
2mfiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.51e-01 80.3% 45.8%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.14e-01 82.0% 76.9%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.97e-01 80.3% 71.2%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 41.0 3.33e-01 86.9% 38.8%
3wmvB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 43.0 3.38e-01 91.8% 100.0%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 3.22e-01 91.8% 72.9%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 3.10e-01 75.4% 96.7%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 41.0 2.47e-01 85.2% 24.0%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.52 36.0 2.70e-01 100.0% 26.1%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 43.0 2.80e-01 95.1% 88.9%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 2.84e-01 93.4% 59.5%
4a0fB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 3.28e-01 98.4% 72.2%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 34.0 3.02e-01 70.5% 44.2%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 42.0 2.67e-01 93.4% 27.7%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 35.0 2.89e-01 75.4% 98.4%
3bu2A02 3.30.1940.10 Alpha Beta › 2-Layer Sandwich › Nucleic acid-binding protein fold › YtpR-like 0.50 35.0 3.41e-01 73.8% 71.0%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4325815 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.84 60.0 3.39e-01 75.4% 7.4%
3972547 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.81 62.0 4.42e-01 80.3% 32.5%
5056599 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.80 61.0 4.46e-01 80.3% 41.3%
2444014 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.80 60.0 4.45e-01 80.3% 33.8%
3721973 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.80 58.0 5.41e-01 77.0% 73.3%
3662319 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.80 57.0 5.20e-01 75.4% 75.0%
3970579 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.80 60.0 4.42e-01 80.3% 34.0%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.79 59.0 5.64e-01 78.7% 70.0%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 58.0 6.11e-01 80.3% 87.3%
4945675 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.78 55.0 4.04e-01 73.8% 36.7%
2570822 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.78 59.0 4.39e-01 80.3% 35.9%
3758025 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.78 55.0 4.32e-01 73.8% 45.8%
4046385 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.78 58.0 4.34e-01 80.3% 34.3%
4261492 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.78 59.0 4.47e-01 80.3% 37.8%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.77 55.0 5.61e-01 75.4% 88.3%
3987478 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.77 57.0 4.40e-01 80.3% 36.9%
5035934 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 52.0 5.16e-01 70.5% 69.2%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.77 55.0 5.58e-01 75.4% 88.3%
5043091 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 56.0 5.43e-01 80.3% 69.1%
4026678 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 56.0 5.35e-01 77.0% 70.0%
4044896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 55.0 5.10e-01 75.4% 65.3%
3947337 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.76 56.0 4.15e-01 80.3% 31.0%
3972956 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.76 56.0 4.23e-01 80.3% 33.1%
3404643 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 52.0 4.96e-01 70.5% 71.4%
3963455 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.76 57.0 4.28e-01 80.3% 40.0%
3781711 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.75 50.0 5.22e-01 73.8% 76.4%
4514731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 53.0 4.75e-01 75.4% 57.6%
4981036 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 50.0 5.64e-01 70.5% 95.6%
3385461 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.74 55.0 4.17e-01 80.3% 39.3%
4064452 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.74 54.0 4.09e-01 80.3% 33.6%
4432348 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 53.0 5.12e-01 75.4% 70.6%
3882695 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.08e-01 70.5% 93.3%
3660755 4.8.1.21 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.73 51.0 4.82e-01 73.8% 70.7%
5025364 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 54.0 5.07e-01 80.3% 70.7%
3443078 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.72 54.0 3.87e-01 80.3% 38.9%
4611708 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.72 47.0 4.78e-01 72.1% 68.3%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.72 51.0 4.81e-01 75.4% 72.0%
3656232 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.72 47.0 5.30e-01 70.5% 91.1%
3546607 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 49.0 5.37e-01 72.1% 90.0%
3577864 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 51.0 4.55e-01 75.4% 56.5%
3839849 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.71 49.0 4.83e-01 77.0% 67.7%
3363360 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 50.0 4.54e-01 75.4% 60.0%
146634 4.1.1.119 beta barrels › SH3 › SH3 › SH3 › DUF5606 0.71 50.0 5.44e-01 75.4% 93.9%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.70 50.0 4.96e-01 75.4% 72.3%
3775592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 51.0 2.71e-01 77.0% 3.8%
3404936 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 48.0 5.23e-01 72.1% 90.0%
3938589 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 48.0 5.21e-01 72.1% 90.0%
3270324 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 47.0 5.12e-01 70.5% 96.0%
4030603 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.73e-01 73.8% 80.9%
None 0.69 50.0 2.69e-01 77.0% 4.7%
3786664 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 52.0 5.63e-01 80.3% 100.0%
3480491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.01e-01 83.6% 86.7%
3264883 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.68 48.0 5.07e-01 75.4% 94.5%
3482683 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.99e-01 77.0% 96.7%
4844109 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 46.0 4.40e-01 70.5% 62.0%
3037102 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.91e-01 77.0% 77.4%
2512682 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 51.0 5.35e-01 82.0% 92.7%
3165077 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 45.0 4.36e-01 70.5% 88.6%
3480350 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 48.0 4.70e-01 75.4% 87.7%
4418620 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 52.0 2.84e-01 83.6% 87.9%
3399912 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 48.0 4.58e-01 75.4% 80.0%
3236054 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 48.0 4.54e-01 77.0% 77.3%
4833642 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 46.0 5.16e-01 72.1% 100.0%
3514867 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 48.0 4.50e-01 77.0% 77.3%
2890675 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 48.0 4.73e-01 77.0% 90.6%
3213114 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 47.0 4.18e-01 77.0% 76.7%
3240651 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 4.58e-01 83.6% 73.8%
3495480 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 5.04e-01 83.6% 96.7%
3541996 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.62 43.0 3.07e-01 73.8% 30.5%
3669346 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.58 39.0 3.66e-01 72.1% 89.9%
4987025 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 41.0 2.71e-01 80.3% 80.4%
4952379 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.55 40.0 2.76e-01 83.6% 81.9%
3425319 2.1.1.87 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RPA43_OB 0.54 40.0 3.33e-01 80.3% 53.6%
3515117 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.53 36.0 2.50e-01 72.1% 23.8%
3617551 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.53 42.0 4.14e-01 88.5% 98.5%
4996887 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 42.0 2.79e-01 91.8% 86.5%
4027847 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.51 41.0 2.86e-01 91.8% 73.6%