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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00554
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00554
Identity
- Kingdom:
- phage
Quality
62.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-65
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pe0A03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 59.0 | 5.55e-01 | 100.0% | 76.6% |
| 2vgeA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.70 | 62.0 | 4.12e-01 | 100.0% | 27.5% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 62.0 | 5.75e-01 | 100.0% | 91.0% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 59.0 | 5.82e-01 | 100.0% | 94.9% |
| 2akkA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 58.0 | 5.24e-01 | 100.0% | 74.3% |
| 2vbfA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.65 | 47.0 | 3.36e-01 | 77.8% | 86.5% |
| 2k5iA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.65 | 55.0 | 4.97e-01 | 100.0% | 73.1% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 56.0 | 5.07e-01 | 100.0% | 76.0% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 4.20e-01 | 96.3% | 100.0% |
| 1m2vB03 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.59 | 44.0 | 4.29e-01 | 83.3% | 93.5% |
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 43.0 | 4.30e-01 | 83.3% | 86.0% |
| 3ooqF01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.57 | 44.0 | 3.80e-01 | 90.7% | 88.3% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 48.0 | 3.46e-01 | 100.0% | 38.7% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.72e-01 | 83.3% | 71.2% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.54 | 44.0 | 4.30e-01 | 100.0% | 96.8% |
| 1u5dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.69e-01 | 100.0% | 75.0% |
| 4oj5B01 | 3.30.2020.50 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.52 | 36.0 | 3.29e-01 | 75.9% | 63.4% |
| 1w7cA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.21e-01 | 92.6% | 85.2% |
| 2oqcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.50 | 40.0 | 2.61e-01 | 100.0% | 87.4% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.91 | 72.0 | 7.58e-01 | 100.0% | 93.8% |
| 4003015 | 4.1.1.318 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26085 | 0.76 | 69.0 | 6.73e-01 | 100.0% | 93.2% |
| 3243536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 68.0 | 5.76e-01 | 100.0% | 62.4% |
| 3592220 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.76 | 57.0 | 5.13e-01 | 100.0% | 59.5% |
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.74 | 59.0 | 6.18e-01 | 100.0% | 94.0% |
| 3235419 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 64.0 | 6.17e-01 | 98.1% | 86.7% |
| 4133335 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.72 | 63.0 | 6.13e-01 | 100.0% | 88.3% |
| 4956454 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 51.0 | 5.16e-01 | 100.0% | 76.4% |
| 3941133 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 61.0 | 5.50e-01 | 100.0% | 69.3% |
| 3475881 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 61.0 | 5.57e-01 | 100.0% | 72.9% |
| 3595897 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.70 | 49.0 | 4.93e-01 | 100.0% | 72.7% |
| 3593781 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.70 | 52.0 | 5.25e-01 | 100.0% | 80.0% |
| 3705471 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.69 | 51.0 | 5.09e-01 | 100.0% | 78.2% |
| 3703797 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.68 | 50.0 | 5.04e-01 | 100.0% | 78.2% |
| 3266009 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.68 | 48.0 | 4.79e-01 | 100.0% | 72.7% |
| 3251095 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.67 | 50.0 | 4.83e-01 | 100.0% | 71.7% |
| 4960540 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 58.0 | 5.48e-01 | 100.0% | 87.7% |
| 537 | 4.1.1.37 ↗ | beta barrels › SH3 › SH3 › SH3 › YjdM | 0.66 | 58.0 | 5.29e-01 | 100.0% | 76.4% |
| 3948011 | 3816.1.1.1 ↗ | beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD | 0.66 | 53.0 | 4.80e-01 | 92.6% | 88.5% |
| 3590425 | 4.1.1.37 ↗ | beta barrels › SH3 › SH3 › SH3 › YjdM | 0.66 | 57.0 | 5.27e-01 | 98.1% | 77.1% |
| 3614906 | 4.26.1.8 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 | 0.65 | 54.0 | 4.97e-01 | 94.4% | 98.6% |
| 3923898 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.62 | 43.0 | 3.83e-01 | 72.2% | 52.5% |
| 3394414 | 376.1.2.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET | 0.62 | 44.0 | 3.24e-01 | 75.9% | 40.5% |
| 3487738 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.60 | 42.0 | 4.38e-01 | 77.8% | 94.0% |
| 5081548 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.59 | 45.0 | 3.34e-01 | 87.0% | 47.7% |
| 3597664 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.58 | 39.0 | 4.20e-01 | 70.4% | 91.1% |
| 3581076 | 376.1.2.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET | 0.58 | 40.0 | 3.03e-01 | 74.1% | 42.3% |
| 4957580 | 10.29.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins | 0.57 | 48.0 | 3.74e-01 | 100.0% | 80.0% |
| 4017436 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.56 | 47.0 | 3.18e-01 | 100.0% | 22.9% |
| 3817230 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.55 | 46.0 | 3.25e-01 | 100.0% | 33.5% |
| 4030786 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.53 | 41.0 | 3.40e-01 | 85.2% | 69.0% |
| 3796346 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 44.0 | 3.32e-01 | 100.0% | 63.4% |
| 3929257 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.52 | 41.0 | 3.72e-01 | 92.6% | 100.0% |
D2
high
residues 303-356
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ohoB02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.71 | 50.0 | 3.88e-01 | 74.1% | 36.9% |
| 3l8nA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.66 | 55.0 | 4.99e-01 | 96.3% | 82.9% |
| 4z7fB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.66 | 46.0 | 3.35e-01 | 75.9% | 34.5% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 4.70e-01 | 75.9% | 100.0% |
| 4cqbA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.64 | 54.0 | 3.43e-01 | 100.0% | 50.8% |
| 1td6A01 | 1.20.1480.10 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 | 0.64 | 45.0 | 3.72e-01 | 75.9% | 52.0% |
| 2p10C01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 53.0 | 3.52e-01 | 98.1% | 75.8% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 41.0 | 3.86e-01 | 74.1% | 66.7% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.60 | 47.0 | 4.30e-01 | 96.3% | 78.0% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.59 | 49.0 | 3.47e-01 | 100.0% | 80.2% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.59 | 42.0 | 3.85e-01 | 79.6% | 69.2% |
| 2pjrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 47.0 | 3.95e-01 | 96.3% | 76.4% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 40.0 | 3.67e-01 | 74.1% | 85.7% |
| 2rjnA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 47.0 | 3.66e-01 | 100.0% | 43.7% |
| 3idwA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.55 | 41.0 | 3.97e-01 | 87.0% | 98.5% |
| 2ipqX01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.94e-01 | 70.4% | 100.0% |
| 2elhA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.62e-01 | 75.9% | 63.6% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 43.0 | 2.79e-01 | 92.6% | 20.3% |
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 40.0 | 3.48e-01 | 94.4% | 91.4% |
| 7crnA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 42.0 | 2.83e-01 | 96.3% | 77.0% |
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.51 | 37.0 | 2.99e-01 | 83.3% | 42.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3808658 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.75 | 64.0 | 5.39e-01 | 98.1% | 77.9% |
| 3716601 | 109.4.1.265 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CEP104-like_TOG | 0.75 | 59.0 | 3.73e-01 | 88.9% | 20.0% |
| 3609269 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.69 | 53.0 | 4.97e-01 | 87.0% | 85.7% |
| 2416852 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.69 | 58.0 | 3.81e-01 | 100.0% | 37.7% |
| 3271229 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.69 | 49.0 | 4.49e-01 | 81.5% | 56.0% |
| 3561187 | 109.4.1.422 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CAS_CSE1,Cse1 | 0.69 | 54.0 | 3.07e-01 | 88.9% | 11.6% |
| 3340083 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 59.0 | 5.19e-01 | 98.1% | 86.3% |
| 3323272 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 58.0 | 4.35e-01 | 100.0% | 73.9% |
| 3192784 | 109.4.1.1821 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Laa1_Sip1_HTR5, HEAT_HEATR5A, TPR_LAA1_C | 0.65 | 56.0 | 2.94e-01 | 100.0% | 16.9% |
| 3388396 | 101.1.1.485 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_22 | 0.63 | 51.0 | 4.84e-01 | 96.3% | 92.6% |
| 3476820 | 109.4.1.1465 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IPO11 | 0.62 | 52.0 | 2.85e-01 | 100.0% | 9.7% |
| 5026152 | 7579.1.1.13 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH | 0.60 | 51.0 | 3.31e-01 | 100.0% | 55.5% |
| 4828264 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.56 | 32.0 | 3.32e-01 | 72.2% | 58.5% |
| 3694758 | 109.4.1.1982 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26523 | 0.56 | 47.0 | 3.23e-01 | 100.0% | 78.2% |
| 3971860 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.54 | 36.0 | 3.69e-01 | 70.4% | 74.0% |
| 3501945 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 37.0 | 3.56e-01 | 74.1% | 86.2% |
| 3703289 | 193.1.1.8 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › HOOK_N | 0.53 | 42.0 | 3.07e-01 | 100.0% | 89.2% |