←Back to structures

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00605

Bact-Vir

GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00605

Identity

Kingdom:
phage

Quality

67.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 217-342
PDB
D2 high residues 390-498
PDB
Domain cluster: rep: H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00433__D105-198
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 32.0 2.79e-01 90.8% 36.2%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.56 38.0 3.67e-01 97.2% 60.2%
2oggA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.55 43.0 4.02e-01 82.6% 95.5%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.24e-01 89.9% 39.0%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 3.13e-01 78.0% 93.4%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 38.0 3.07e-01 77.1% 51.1%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 42.0 3.36e-01 88.1% 91.5%
4u0wA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 40.0 3.51e-01 82.6% 77.1%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.58e-01 70.6% 87.5%
2p19A01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.51 38.0 3.67e-01 81.7% 97.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000011 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.63 47.0 4.76e-01 78.9% 91.8%
4059436 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.33e-01 90.8% 76.7%
3613746 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 40.0 2.38e-01 72.5% 11.3%
3838248 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.57 31.0 3.23e-01 89.9% 57.1%
3301988 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.56 38.0 3.36e-01 90.8% 49.0%
4857919 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.54 38.0 2.64e-01 73.4% 23.2%
None — 0.53 38.0 2.55e-01 73.4% 34.3%
3665094 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 37.0 2.55e-01 72.5% 26.8%
3256359 5.1.4.151 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.52 37.0 2.38e-01 72.5% 34.1%
3592141 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.51 36.0 3.12e-01 86.2% 47.9%
5018197 3487.1.1.1 ↗ a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › M1E1E6-like 0.51 35.0 3.50e-01 70.6% 88.7%
3417419 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 36.0 3.42e-01 92.7% 60.8%
None — 0.51 40.0 2.69e-01 83.5% 43.5%
3638817 5.1.2.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.51 36.0 2.95e-01 75.2% 60.0%
3883720 7575.1.1.1 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 0.50 42.0 3.39e-01 93.6% 88.0%
D3 high residues 507-585
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00393__D149-228
D4 medium residues 1-76
PDB
D5 medium residues 77-204
PDB