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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00627
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00627
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-112
Domain cluster:
rep: SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00148__D3-94
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.73 | 45.0 | 4.97e-01 | 77.1% | 77.1% |
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.68 | 44.0 | 5.02e-01 | 79.0% | 87.5% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.63 | 41.0 | 3.45e-01 | 71.4% | 38.5% |
| 2c81A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 44.0 | 3.86e-01 | 77.1% | 99.3% |
| 3a2vD02 | 3.30.1020.10 | Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 | 0.59 | 31.0 | 3.24e-01 | 87.6% | 53.7% |
| 3ly1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 44.0 | 4.14e-01 | 84.8% | 76.7% |
| 3fdbA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 41.0 | 3.65e-01 | 78.1% | 75.5% |
| 2ejeA00 | 3.90.1460.10 | Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like | 0.54 | 43.0 | 4.19e-01 | 84.8% | 86.0% |
| 4iu9B01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.54 | 42.0 | 3.29e-01 | 82.9% | 53.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938133 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.86 | 67.0 | 7.37e-01 | 82.9% | 100.0% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 45.0 | 5.59e-01 | 74.3% | 100.0% |
| 3597604 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 45.0 | 3.61e-01 | 82.9% | 33.5% |
| 3718306 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.71 | 43.0 | 3.99e-01 | 81.0% | 48.5% |
| 3257271 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.70 | 42.0 | 4.40e-01 | 78.1% | 65.3% |
| 3187757 | 301.8.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N | 0.64 | 36.0 | 3.65e-01 | 80.0% | 54.3% |
| 4042436 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.63 | 43.0 | 4.26e-01 | 83.8% | 67.3% |
| 3596181 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.58 | 44.0 | 3.45e-01 | 81.0% | 66.7% |
| 3595319 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 40.0 | 3.93e-01 | 71.4% | 76.5% |
| 3219001 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.57 | 44.0 | 3.73e-01 | 81.9% | 64.4% |
| 4375528 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.57 | 42.0 | 4.29e-01 | 77.1% | 81.0% |
| 3286658 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.56 | 41.0 | 3.87e-01 | 78.1% | 92.3% |
| 3748350 | 4305.1.1.1 ↗ | a+b two layers › GTF2I-like repeat › GTF2I-like repeat › GTF2I-like repeat › GTF2I | 0.55 | 42.0 | 4.27e-01 | 81.9% | 88.5% |
| 3498119 | 376.1.3.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › LIM | 0.52 | 32.0 | 4.02e-01 | 71.4% | 100.0% |
| 3577314 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.51 | 39.0 | 3.47e-01 | 80.0% | 82.0% |