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GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00647
Bact-VirGWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00647
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-93
Domain cluster:
rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 20.1 | 1.00e-03 | 93.3% | 83.7% |
| PF13455.13 | MUG113 | 35.7 | 1.50e-08 | 76.4% | 82.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.70 | 50.0 | 5.03e-01 | 75.3% | 95.7% |
| 2n17A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 32.0 | 3.74e-01 | 88.8% | 82.1% |
| 1fuiA03 | 3.20.14.10 | Alpha Beta › Alpha-Beta Barrel › L-fucose Isomerase; Chain A, domain 3 › L-fucose/L-arabinose isomerase, C-terminal | 0.56 | 43.0 | 3.11e-01 | 80.9% | 51.8% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.53 | 39.0 | 4.03e-01 | 78.7% | 97.7% |
| 5adxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 41.0 | 3.43e-01 | 91.0% | 99.4% |
| 2h7aA01 | 3.10.510.20 | Alpha Beta › Roll › NE1680-like fold › YcgL domain | 0.51 | 37.0 | 3.88e-01 | 77.5% | 96.1% |
| 1ydxA01 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.50 | 40.0 | 3.57e-01 | 98.9% | 60.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989300 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.74 | 68.0 | 6.32e-01 | 100.0% | 92.7% |
| 3915866 | 11.1.6.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND | 0.62 | 52.0 | 4.58e-01 | 92.1% | 93.1% |
| 3486002 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.54 | 40.0 | 3.93e-01 | 77.5% | 91.6% |
| 3786945 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.54 | 40.0 | 3.95e-01 | 77.5% | 89.5% |
| 3218109 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.54 | 39.0 | 3.95e-01 | 76.4% | 95.6% |
| 3503254 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.54 | 40.0 | 4.19e-01 | 78.7% | 97.6% |
| 3649276 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.53 | 42.0 | 3.79e-01 | 84.3% | 100.0% |
| 4174474 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.52 | 39.0 | 3.89e-01 | 77.5% | 94.4% |
| 4289852 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.52 | 38.0 | 3.94e-01 | 77.5% | 98.8% |
| 4038267 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.52 | 39.0 | 3.81e-01 | 78.7% | 85.9% |
| 3392995 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.52 | 39.0 | 4.03e-01 | 78.7% | 95.3% |
| 3416551 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.52 | 39.0 | 4.11e-01 | 78.7% | 96.2% |
| 3185862 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.52 | 39.0 | 3.50e-01 | 78.7% | 77.5% |
| 4931464 | 822.3.1.0 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 | 0.52 | 35.0 | 3.75e-01 | 92.1% | 81.3% |