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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00004

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00004

Identity

Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-82
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.68 56.0 4.89e-01 94.4% 73.9%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.68 56.0 5.23e-01 94.4% 83.9%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.67 53.0 5.33e-01 87.5% 91.7%
1fgsA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.66 45.0 2.99e-01 70.8% 62.0%
7n3yC01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.65 47.0 2.97e-01 76.4% 37.3%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 51.0 5.21e-01 87.5% 91.3%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 55.0 3.67e-01 98.6% 84.2%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 56.0 3.73e-01 100.0% 91.1%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 49.0 4.38e-01 84.7% 80.8%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 44.0 3.41e-01 76.4% 88.4%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 53.0 4.36e-01 98.6% 86.4%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.56e-01 70.8% 99.1%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 4.22e-01 83.3% 90.4%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 40.0 3.48e-01 76.4% 47.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 4.03e-01 91.7% 98.4%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 48.0 4.23e-01 93.1% 88.2%
3g0oA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 50.0 3.92e-01 100.0% 92.7%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.57 51.0 3.32e-01 100.0% 88.4%
2uyyA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 3.83e-01 100.0% 89.3%
2gf2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 3.87e-01 100.0% 92.0%
3futA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 3.34e-01 88.9% 47.7%
5y8lB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 3.87e-01 100.0% 91.3%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 48.0 4.34e-01 91.7% 69.5%
3ws7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 48.0 3.76e-01 100.0% 85.1%
3c5qA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.56 39.0 2.82e-01 75.0% 41.7%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 49.0 4.57e-01 97.2% 90.1%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.56 37.0 3.49e-01 91.7% 53.8%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.56 48.0 4.20e-01 97.2% 94.6%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.55 38.0 2.92e-01 75.0% 44.9%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.54 48.0 3.35e-01 100.0% 92.7%
3i7mA00 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.53 47.0 3.84e-01 100.0% 57.1%
5g6rA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 3.53e-01 98.6% 93.6%
5n2iD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 3.23e-01 100.0% 76.6%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 45.0 3.68e-01 100.0% 60.1%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.52 45.0 3.93e-01 97.2% 96.4%
2yc3A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 39.0 2.89e-01 84.7% 55.7%
4d3dA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 38.0 3.09e-01 81.9% 90.5%
4egeA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.52 45.0 3.67e-01 100.0% 57.1%
4fkcA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.52 46.0 3.70e-01 100.0% 55.3%
3cb6A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 43.0 3.30e-01 95.8% 57.1%
1i36A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 42.0 3.43e-01 100.0% 88.7%
3ftbA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 44.0 3.86e-01 100.0% 75.9%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.50 40.0 3.48e-01 90.3% 87.4%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.50 39.0 3.90e-01 90.3% 100.0%
4zngA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.50 43.0 3.62e-01 100.0% 58.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3232913 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.73 66.0 4.85e-01 100.0% 77.3%
3556708 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.71 58.0 5.73e-01 90.3% 94.7%
3841571 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.70 63.0 4.71e-01 100.0% 77.8%
3889564 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.70 63.0 4.85e-01 100.0% 87.5%
3899940 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.69 57.0 5.50e-01 90.3% 88.7%
3781848 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.69 56.0 5.65e-01 90.3% 92.9%
4937221 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 51.0 5.11e-01 81.9% 80.0%
4993386 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 55.0 5.09e-01 93.1% 74.7%
3509095 3425.2.1.3 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.66 57.0 3.74e-01 98.6% 37.9%
4679871 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.66 55.0 5.37e-01 94.4% 85.0%
4971631 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 49.0 4.21e-01 80.6% 79.1%
4390882 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.64 41.0 3.68e-01 87.5% 46.0%
3306543 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.63 51.0 5.16e-01 90.3% 92.9%
5067782 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 46.0 4.72e-01 83.3% 88.6%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.60 42.0 3.31e-01 73.6% 70.8%
4982613 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 46.0 4.83e-01 86.1% 98.5%
4016672 304.112.1.2 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.60 50.0 3.79e-01 95.8% 69.2%
3950424 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 43.0 4.66e-01 94.4% 95.0%
4034422 3425.2.1.3 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.58 49.0 3.52e-01 98.6% 50.2%
1152945 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.58 46.0 4.39e-01 91.7% 72.1%
3418340 5.1.5.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.57 42.0 2.71e-01 100.0% 17.0%
4197656 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.57 48.0 4.05e-01 91.7% 73.3%
3665510 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.57 41.0 2.70e-01 100.0% 17.0%
3273142 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.57 40.0 2.64e-01 79.2% 17.1%
3960063 267.1.1.2 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Hydrolase 0.56 47.0 3.83e-01 91.7% 62.2%
4948844 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.56 47.0 3.97e-01 91.7% 74.2%
6638 241.7.1.2 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › DUF2002 0.56 48.0 4.20e-01 97.2% 94.6%
3483569 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.03e-01 100.0% 17.0%
5037569 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.56 47.0 3.48e-01 94.4% 77.9%
4460735 3264.1.1.0 0.55 42.0 3.32e-01 80.6% 65.2%
4958566 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.55 46.0 3.91e-01 91.7% 73.3%
2320152 3264.1.1.0 0.55 41.0 3.29e-01 79.2% 79.9%
3598725 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 45.0 3.38e-01 93.1% 94.7%
3408722 633.23.1.20 alpha bundles › Bromodomain-like › Claudin › Claudin › Atthog 0.53 43.0 3.40e-01 93.1% 97.0%
5047882 2484.3.1.1 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.53 38.0 3.06e-01 76.4% 67.6%
4634757 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.52 46.0 3.80e-01 100.0% 60.7%
2129708 2484.3.1.0 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain 0.52 45.0 3.64e-01 98.6% 57.2%
4946619 2484.3.1.0 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain 0.52 46.0 3.69e-01 100.0% 54.5%
3600254 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 43.0 3.23e-01 93.1% 97.3%
1562389 3308.2.1.0 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein 0.52 46.0 3.29e-01 98.6% 53.6%
3609092 633.23.1.23 alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.52 42.0 3.23e-01 91.7% 100.0%
3615220 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 42.0 3.25e-01 93.1% 98.9%
4999250 2484.3.1.1 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.51 40.0 3.31e-01 86.1% 100.0%
3516693 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 46.0 3.93e-01 100.0% 78.3%
4108958 2484.3.1.3 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › FACT-Spt16_Nlob 0.51 43.0 3.37e-01 98.6% 55.4%
4150629 2484.3.1.1 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.51 44.0 3.65e-01 98.6% 56.3%
3169522 5.1.5.200 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF30137 0.51 45.0 2.72e-01 98.6% 26.5%
3708221 633.23.1.23 alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.51 42.0 3.19e-01 91.7% 95.4%
3773831 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 42.0 2.51e-01 95.8% 19.5%
3890147 633.23.1.33 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 0.51 41.0 3.04e-01 93.1% 84.8%
4964036 2484.3.1.1 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.51 44.0 3.57e-01 98.6% 55.7%
2323829 3484.1.1.2 a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.51 39.0 3.17e-01 88.9% 64.6%
3481944 2484.3.1.3 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › FACT-Spt16_Nlob 0.51 43.0 3.43e-01 98.6% 59.4%
None 0.50 39.0 3.15e-01 90.3% 40.5%
3521604 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.50 39.0 2.98e-01 90.3% 95.4%