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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00038
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00038
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-130
Domain cluster:
rep: NC_031231.1__YP_009301333.1__BJD78_gp76__00076__D62-169
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.65 | 37.0 | 4.55e-01 | 100.0% | 88.7% |
| 1jm7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 27.0 | 3.01e-01 | 77.8% | 53.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2036620 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.81 | 45.0 | 5.26e-01 | 85.7% | 76.1% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.80 | 47.0 | 5.33e-01 | 100.0% | 75.0% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.72 | 44.0 | 5.05e-01 | 79.4% | 82.1% |
| 3953524 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.70 | 44.0 | 4.11e-01 | 79.4% | 51.6% |
| 3199665 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.64 | 55.0 | 4.12e-01 | 91.3% | 62.4% |
| 3839237 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.61 | 55.0 | 4.97e-01 | 96.8% | 82.9% |
| 4021854 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.61 | 53.0 | 4.62e-01 | 91.3% | 76.2% |
| 4056680 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.61 | 54.0 | 5.60e-01 | 97.6% | 99.2% |
| 4964156 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.60 | 51.0 | 5.38e-01 | 96.8% | 98.3% |
| 3957069 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.60 | 53.0 | 4.88e-01 | 94.4% | 77.5% |
| 3963335 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.60 | 54.0 | 5.36e-01 | 99.2% | 92.2% |
| 4021924 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.60 | 56.0 | 4.25e-01 | 100.0% | 64.0% |
| 3199415 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.59 | 54.0 | 4.27e-01 | 96.8% | 73.1% |
| 3637715 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.58 | 54.0 | 5.11e-01 | 100.0% | 98.0% |
| 3904123 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 31.0 | 3.25e-01 | 82.5% | 54.8% |
| 3196822 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.58 | 53.0 | 4.69e-01 | 99.2% | 97.2% |
| 3183345 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.57 | 51.0 | 4.85e-01 | 97.6% | 99.3% |
| 3208720 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.56 | 50.0 | 5.11e-01 | 94.4% | 100.0% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.56 | 44.0 | 4.47e-01 | 83.3% | 98.4% |
| 3209528 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.55 | 51.0 | 5.03e-01 | 99.2% | 100.0% |
| 3635140 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.55 | 45.0 | 4.87e-01 | 93.7% | 100.0% |
| 3196107 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.54 | 49.0 | 4.46e-01 | 100.0% | 90.0% |
D2
high
residues 145-347
Domain cluster:
rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09414.16 best | RNA_ligase | 99.9 | 2.70e-28 | 83.7% | 99.4% |