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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00056
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00056
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-103
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00033__D3-92
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y7uA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 44.0 | 3.73e-01 | 71.6% | 69.5% |
| 4kreA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 57.0 | 4.25e-01 | 100.0% | 94.2% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 44.0 | 3.83e-01 | 72.5% | 76.6% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 44.0 | 3.97e-01 | 72.5% | 83.1% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 44.0 | 3.74e-01 | 74.5% | 71.3% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.61 | 52.0 | 4.03e-01 | 92.2% | 84.3% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 43.0 | 4.03e-01 | 72.5% | 85.5% |
| 2q2bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 43.0 | 3.87e-01 | 74.5% | 78.7% |
| 2fs2B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 43.0 | 3.91e-01 | 75.5% | 77.5% |
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.59 | 42.0 | 3.56e-01 | 100.0% | 44.7% |
| 3lw3B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 39.0 | 3.56e-01 | 70.6% | 73.0% |
| 3r87A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 43.0 | 3.94e-01 | 78.4% | 98.5% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 48.0 | 3.91e-01 | 92.2% | 82.1% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 43.0 | 3.88e-01 | 99.0% | 59.6% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 48.0 | 4.40e-01 | 90.2% | 90.2% |
| 1wlgA02 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.56 | 49.0 | 4.44e-01 | 96.1% | 69.3% |
| 4rmmA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 38.0 | 3.50e-01 | 70.6% | 74.8% |
| 5eo4A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 40.0 | 3.61e-01 | 74.5% | 92.1% |
| 2zuoA10 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.56 | 41.0 | 4.03e-01 | 100.0% | 70.2% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 39.0 | 3.60e-01 | 73.5% | 95.5% |
| 2hljA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 39.0 | 3.50e-01 | 72.5% | 89.1% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 44.0 | 4.02e-01 | 88.2% | 97.2% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.55 | 48.0 | 3.61e-01 | 95.1% | 73.1% |
| 1vl4A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.53 | 43.0 | 3.38e-01 | 86.3% | 68.8% |
| 1u17A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 45.0 | 3.69e-01 | 93.1% | 78.9% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.53 | 46.0 | 3.50e-01 | 98.0% | 88.8% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.51 | 43.0 | 4.18e-01 | 95.1% | 89.8% |
| 3qooA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 36.0 | 3.37e-01 | 74.5% | 89.6% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 39.0 | 3.53e-01 | 87.3% | 60.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.72 | 44.0 | 4.16e-01 | 76.5% | 51.2% |
| 4929073 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.70 | 55.0 | 4.59e-01 | 83.3% | 51.8% |
| 5040396 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.68 | 48.0 | 4.30e-01 | 72.5% | 90.0% |
| 4943724 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 40.0 | 2.71e-01 | 96.1% | 17.1% |
| 3334339 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.67 | 55.0 | 4.16e-01 | 91.2% | 91.8% |
| 3263236 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.63 | 43.0 | 3.77e-01 | 70.6% | 74.0% |
| 5014272 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 40.0 | 4.68e-01 | 80.4% | 94.3% |
| 3241023 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 55.0 | 3.56e-01 | 100.0% | 86.3% |
| 4819454 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.61 | 48.0 | 4.82e-01 | 88.2% | 81.4% |
| 4680916 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.61 | 49.0 | 4.49e-01 | 96.1% | 66.2% |
| 3814550 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.61 | 43.0 | 3.36e-01 | 71.6% | 62.4% |
| 3642523 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.60 | 41.0 | 3.65e-01 | 70.6% | 73.8% |
| 4560456 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.59 | 46.0 | 4.11e-01 | 96.1% | 59.3% |
| 3838507 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.59 | 48.0 | 3.98e-01 | 97.1% | 50.3% |
| 142715 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.58 | 41.0 | 3.82e-01 | 74.5% | 96.2% |
| 5019618 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.58 | 42.0 | 3.65e-01 | 75.5% | 71.3% |
| 3448058 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.57 | 51.0 | 3.54e-01 | 100.0% | 31.6% |
| 4125649 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.57 | 39.0 | 3.21e-01 | 70.6% | 64.9% |
| 4978131 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.56 | 45.0 | 3.34e-01 | 87.3% | 92.0% |
| 5045339 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 49.0 | 3.40e-01 | 100.0% | 29.9% |
| 3638977 | 5.1.4.352 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28370 | 0.55 | 50.0 | 3.16e-01 | 100.0% | 24.7% |
| 3740970 | 5.1.4.249 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 | 0.54 | 48.0 | 3.28e-01 | 100.0% | 28.0% |
| 4642457 | 12.3.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF28395 | 0.54 | 46.0 | 3.33e-01 | 98.0% | 50.8% |
| 4969245 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 45.0 | 3.95e-01 | 100.0% | 63.2% |
| 3389069 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.52 | 38.0 | 3.04e-01 | 96.1% | 37.1% |
| 5058974 | 222.1.1.5 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA | 0.52 | 40.0 | 3.55e-01 | 83.3% | 89.3% |
| 4873102 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.51 | 46.0 | 4.22e-01 | 98.0% | 76.9% |
| 3968293 | 71.2.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › DUF3108 | 0.51 | 43.0 | 3.45e-01 | 93.1% | 94.8% |
| 3248518 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.51 | 36.0 | 3.46e-01 | 99.0% | 62.6% |