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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00057

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00057

Identity

Kingdom:
phage

Quality

92.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-130
PDB
Domain cluster: rep: gwf2_scaffold_96_prodigal-single.1__X__X__00453__D4-126
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01467.33 best CTP_transf_like 51.9 1.30e-13 96.1% 72.9%
PF08218.18 Citrate_ly_lig 23.4 5.80e-05 78.9% 33.5%
D2 high residues 147-334
PDB
Domain cluster: rep: NC_071015.1__YP_010676897.1__PQD71_gp241__00192__D9-147
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r8qA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.80 76.0 6.14e-01 100.0% 71.3%
3ecmA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.80 76.0 6.11e-01 100.0% 78.1%
1tazA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.80 75.0 6.18e-01 100.0% 74.2%
1zklA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.79 74.0 6.14e-01 100.0% 76.7%
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.79 74.0 5.93e-01 100.0% 71.5%
3dynA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.78 73.0 5.98e-01 100.0% 70.1%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 35.0 4.61e-01 77.7% 92.9%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 36.0 4.55e-01 78.7% 85.8%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 36.0 4.76e-01 77.7% 99.0%
1u6zA03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.66 49.0 5.47e-01 83.5% 97.3%
3a11B01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.56 31.0 3.71e-01 73.9% 79.2%
1t5oA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.55 31.0 3.54e-01 76.6% 70.9%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 39.0 4.29e-01 95.7% 91.1%
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.54 27.0 3.55e-01 75.5% 89.4%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.53 41.0 4.42e-01 80.9% 95.5%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 37.0 4.20e-01 97.3% 99.3%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 42.0 3.77e-01 88.8% 92.3%
1yhlA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 44.0 3.57e-01 94.7% 73.2%
3p0uA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 41.0 3.88e-01 85.1% 89.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968184 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.93 75.0 7.28e-01 99.5% 76.1%
4932569 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.92 76.0 7.37e-01 100.0% 77.6%
3291508 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.90 74.0 7.02e-01 93.6% 73.5%
3256767 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.88 76.0 7.17e-01 91.0% 76.1%
3503763 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.87 72.0 6.93e-01 92.6% 76.2%
3934120 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.85 72.0 6.87e-01 94.7% 76.7%
3177188 131.1.1.1 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › PDEase_I 0.78 74.0 5.83e-01 100.0% 61.4%
4953492 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.76 51.0 5.62e-01 81.9% 82.6%
3586513 131.1.1.1 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › PDEase_I 0.71 64.0 5.80e-01 95.2% 86.0%
5012492 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.71 61.0 5.43e-01 88.8% 69.6%
2319365 131.1.1.8 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › SidE_PDE 0.71 58.0 4.82e-01 85.1% 88.2%
3960650 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.67 57.0 5.57e-01 88.8% 91.7%
5001655 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.67 54.0 5.32e-01 83.5% 89.0%
5001024 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.65 61.0 5.37e-01 98.9% 72.1%
4969504 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.65 56.0 5.85e-01 91.5% 97.7%
3719289 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.62 42.0 4.84e-01 85.6% 94.8%
5065754 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.61 54.0 4.88e-01 94.1% 90.4%
4964438 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.60 33.0 4.03e-01 80.3% 82.5%
5042121 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.60 54.0 4.64e-01 96.8% 85.2%
2808456 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.58 30.0 3.88e-01 75.5% 86.1%
5048002 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.56 33.0 3.83e-01 97.9% 80.0%
3375117 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 36.0 3.99e-01 95.7% 82.1%
3407936 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.55 36.0 4.24e-01 81.9% 96.8%
3932767 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.54 43.0 3.99e-01 85.1% 89.4%
3335753 592.6.1.3 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › DExH14_plug 0.53 28.0 3.47e-01 76.6% 80.0%
3742639 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 38.0 4.21e-01 97.9% 95.3%
3570983 6103.1.1.1 ↗ alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › DAXX_hist_bd 0.50 29.0 2.87e-01 93.1% 48.1%