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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00064
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00064
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 280-429
Domain cluster:
rep: IMGVR_UViG_3300000151_000032-3300000151-SI53jan11_200mDRAFT_10009437__D1-99
D2
medium
residues 3-133
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 29.0 | 3.21e-01 | 71.8% | 64.1% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.51 | 30.0 | 3.26e-01 | 71.8% | 67.3% |
D3
medium
residues 147-202
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.75 | 58.0 | 4.65e-01 | 83.9% | 86.9% |
| 5iduC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.73 | 51.0 | 3.70e-01 | 75.0% | 73.0% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.70 | 56.0 | 5.22e-01 | 87.5% | 81.4% |
| 3vusB00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.68 | 54.0 | 3.46e-01 | 89.3% | 18.8% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.66 | 55.0 | 3.32e-01 | 96.4% | 69.9% |
| 6gnaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 48.0 | 3.31e-01 | 76.8% | 95.5% |
| 1bvyB00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.65 | 54.0 | 3.22e-01 | 96.4% | 45.9% |
| 1xa3A01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.64 | 53.0 | 3.35e-01 | 92.9% | 58.9% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.62 | 52.0 | 3.83e-01 | 94.6% | 67.5% |
| 3sdbA03 | 1.10.10.1140 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Glutamine-dependent NAD+ synthetase, C-terminal domain | 0.60 | 50.0 | 3.92e-01 | 94.6% | 68.3% |
| 6n6qD00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 50.0 | 3.02e-01 | 100.0% | 42.3% |
| 7kpsB01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 50.0 | 3.48e-01 | 92.9% | 63.1% |
| 6ve6A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 48.0 | 3.12e-01 | 89.3% | 76.6% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.59 | 48.0 | 3.59e-01 | 92.9% | 53.0% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.58 | 50.0 | 4.23e-01 | 94.6% | 91.5% |
| 3fghA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.58 | 45.0 | 4.26e-01 | 83.9% | 89.6% |
| 4i1mB02 | 1.25.40.830 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 45.0 | 3.33e-01 | 85.7% | 91.2% |
| 1xb4B01 | 1.10.10.570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" | 0.58 | 41.0 | 3.36e-01 | 75.0% | 76.9% |
| 3a1kA01 | 1.10.20.60 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain | 0.55 | 41.0 | 4.18e-01 | 85.7% | 92.6% |
| 3n4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 31.0 | 2.42e-01 | 75.0% | 25.2% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 46.0 | 3.14e-01 | 98.2% | 36.0% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 43.0 | 3.39e-01 | 91.1% | 44.4% |
| 1y1aA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 43.0 | 3.79e-01 | 92.9% | 71.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3919329 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.74 | 62.0 | 4.85e-01 | 91.1% | 72.2% |
| 4469924 | 101.1.2.293 ↗ | alpha arrays › HTH › HTH › winged helix domain › IncFII_repA | 0.71 | 55.0 | 3.53e-01 | 83.9% | 53.7% |
| 3180179 | 148.1.1.15 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-X | 0.71 | 58.0 | 5.21e-01 | 87.5% | 88.0% |
| 3450546 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 60.0 | 4.68e-01 | 96.4% | 63.6% |
| 4046452 | 101.1.1.102 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 | 0.67 | 56.0 | 4.73e-01 | 96.4% | 69.0% |
| 5050345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 57.0 | 4.76e-01 | 92.9% | 84.2% |
| 3809086 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.65 | 54.0 | 4.69e-01 | 92.9% | 60.0% |
| 3353701 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.64 | 55.0 | 4.54e-01 | 96.4% | 70.0% |
| 4952310 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.61 | 43.0 | 2.88e-01 | 73.2% | 96.6% |
| 5069039 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.61 | 50.0 | 3.73e-01 | 91.1% | 100.0% |
| 3994820 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.60 | 48.0 | 3.42e-01 | 92.9% | 60.0% |
| 2430528 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.58 | 42.0 | 3.29e-01 | 75.0% | 54.9% |
| 3643664 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 46.0 | 4.22e-01 | 94.6% | 78.7% |