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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00086
Bact-VirGWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00086
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 258-340
D2
medium
residues 1-66
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4npsA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 42.0 | 4.40e-01 | 74.2% | 75.9% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 39.0 | 2.52e-01 | 74.2% | 12.6% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 42.0 | 4.05e-01 | 78.8% | 63.5% |
| 3zm6A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.60 | 45.0 | 3.17e-01 | 90.9% | 24.7% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 49.0 | 3.19e-01 | 90.9% | 99.3% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 42.0 | 3.55e-01 | 77.3% | 65.1% |
| 2p6rA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 39.0 | 2.81e-01 | 72.7% | 89.8% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.57 | 39.0 | 2.85e-01 | 71.2% | 95.2% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.56 | 43.0 | 4.00e-01 | 83.3% | 85.7% |
| 3kd9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 40.0 | 3.01e-01 | 75.8% | 35.3% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 40.0 | 3.69e-01 | 77.3% | 67.4% |
| 2rdgA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 36.0 | 3.53e-01 | 78.8% | 62.0% |
| 3x29A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.55 | 43.0 | 3.24e-01 | 86.4% | 86.7% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.55 | 40.0 | 3.60e-01 | 78.8% | 73.7% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.54 | 42.0 | 3.81e-01 | 84.8% | 89.1% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.54 | 42.0 | 3.95e-01 | 84.8% | 87.7% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.54 | 41.0 | 4.05e-01 | 83.3% | 80.3% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.54 | 30.0 | 3.38e-01 | 87.9% | 73.9% |
| 1k0eB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.54 | 39.0 | 2.40e-01 | 77.3% | 20.5% |
| 4o2zA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 35.0 | 2.70e-01 | 84.8% | 28.8% |
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.54 | 31.0 | 3.27e-01 | 83.3% | 60.0% |
| 2od0A00 | 3.30.1460.30 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone | 0.53 | 37.0 | 3.32e-01 | 75.8% | 100.0% |
| 4a17E01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 40.0 | 3.75e-01 | 83.3% | 85.9% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 45.0 | 3.40e-01 | 97.0% | 77.3% |
| 1xovA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 33.0 | 3.22e-01 | 71.2% | 56.9% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 39.0 | 3.24e-01 | 83.3% | 73.4% |
| 5ejrA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 37.0 | 3.56e-01 | 77.3% | 72.5% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.52 | 40.0 | 3.70e-01 | 84.8% | 85.9% |
| 7ffnN01 | 2.60.40.3200 | Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain | 0.51 | 39.0 | 2.94e-01 | 86.4% | 56.4% |
| 8cvmg01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 40.0 | 3.96e-01 | 89.4% | 95.9% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 39.0 | 3.22e-01 | 86.4% | 76.7% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 33.0 | 3.48e-01 | 75.8% | 74.1% |
| 4ifsA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.51 | 38.0 | 3.17e-01 | 84.8% | 48.5% |
| 1vq8E01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.50 | 39.0 | 3.71e-01 | 84.8% | 89.9% |
| 2gcjA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.50 | 39.0 | 3.14e-01 | 84.8% | 49.3% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943749 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.69 | 43.0 | 2.91e-01 | 81.8% | 16.5% |
| 3985978 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 43.0 | 3.88e-01 | 83.3% | 47.8% |
| 4934281 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 45.0 | 3.51e-01 | 71.2% | 93.8% |
| 3707372 | 7039.1.1.0 ↗ | a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM | 0.64 | 49.0 | 3.29e-01 | 81.8% | 35.8% |
| 4997414 | 325.1.7.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H | 0.64 | 43.0 | 3.34e-01 | 71.2% | 100.0% |
| 3225668 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.61 | 36.0 | 2.52e-01 | 72.7% | 16.5% |
| 3289369 | 220.1.1.255 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 | 0.60 | 44.0 | 4.14e-01 | 77.3% | 63.7% |
| 4981604 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.60 | 42.0 | 3.15e-01 | 72.7% | 58.7% |
| 3222321 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.60 | 41.0 | 2.78e-01 | 72.7% | 23.9% |
| 5066347 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 40.0 | 3.13e-01 | 71.2% | 85.3% |
| 5030534 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.58 | 37.0 | 3.63e-01 | 75.8% | 57.3% |
| 1921563 | 101.1.2.175 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_57 | 0.58 | 47.0 | 4.07e-01 | 92.4% | 90.7% |
| 4989374 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.57 | 45.0 | 4.17e-01 | 84.8% | 78.8% |
| 4648433 | 4.8.1.26 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 | 0.57 | 42.0 | 3.86e-01 | 77.3% | 81.2% |
| 4454944 | 101.1.2.468 ↗ | alpha arrays › HTH › HTH › winged helix domain › McbB | 0.57 | 45.0 | 4.28e-01 | 87.9% | 96.2% |
| 4545531 | 220.1.1.255 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 | 0.57 | 42.0 | 3.93e-01 | 77.3% | 63.7% |
| 4034423 | 4.8.1.26 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 | 0.57 | 41.0 | 3.83e-01 | 77.3% | 84.7% |
| 3872745 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.57 | 39.0 | 3.39e-01 | 74.2% | 45.7% |
| 3411522 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.56 | 40.0 | 3.75e-01 | 78.8% | 61.3% |
| 4031431 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 38.0 | 3.87e-01 | 84.8% | 70.8% |
| 3949940 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.56 | 37.0 | 3.43e-01 | 71.2% | 52.9% |
| 4027872 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 39.0 | 3.47e-01 | 72.7% | 72.6% |
| 4352331 | 101.1.2.788 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29760 | 0.56 | 43.0 | 3.89e-01 | 83.3% | 78.9% |
| 4039616 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 42.0 | 3.12e-01 | 80.3% | 97.5% |
| 4982077 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 39.0 | 3.50e-01 | 75.8% | 77.9% |
| 4980224 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.55 | 44.0 | 3.69e-01 | 100.0% | 48.8% |
| 3469917 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.55 | 37.0 | 3.36e-01 | 72.7% | 49.5% |
| 4656873 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.55 | 40.0 | 3.30e-01 | 78.8% | 80.6% |
| 4569627 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.54 | 47.0 | 3.08e-01 | 100.0% | 30.2% |
| 3838921 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.53 | 40.0 | 3.80e-01 | 83.3% | 83.7% |
| 4945853 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.52 | 40.0 | 3.81e-01 | 84.8% | 90.0% |
| 3921879 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 44.0 | 3.35e-01 | 95.5% | 46.3% |
| 4041865 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.52 | 40.0 | 2.60e-01 | 86.4% | 84.4% |
| 3286598 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.52 | 42.0 | 3.27e-01 | 97.0% | 95.4% |
| 4429100 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.52 | 38.0 | 3.54e-01 | 81.8% | 81.1% |
| 4098275 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.52 | 40.0 | 3.82e-01 | 84.8% | 86.3% |
| 5028466 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.52 | 42.0 | 3.42e-01 | 87.9% | 63.3% |
| 4929896 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.52 | 39.0 | 3.75e-01 | 84.8% | 90.0% |
| 4388719 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.51 | 40.0 | 3.69e-01 | 87.9% | 83.3% |
| 4099392 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.51 | 40.0 | 3.64e-01 | 89.4% | 80.0% |
| 4286824 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.51 | 39.0 | 3.64e-01 | 87.9% | 83.3% |
| 4632831 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.51 | 37.0 | 3.28e-01 | 77.3% | 72.6% |
| 5004081 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.50 | 39.0 | 2.55e-01 | 86.4% | 86.6% |
| 4301925 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.50 | 37.0 | 3.42e-01 | 78.8% | 84.7% |
D3
medium
residues 102-253
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00032__D207-321
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26926.1 best | Phage_T4_rIIB | 132.2 | 3.40e-38 | 94.7% | 31.6% |