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GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00096

Bact-Vir

GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00096

Identity

Kingdom:
phage

Quality

90.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 6.31e-01 90.3% 100.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 6.26e-01 100.0% 91.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 6.14e-01 100.0% 87.9%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 64.0 6.14e-01 100.0% 91.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.53e-01 100.0% 77.1%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.68 60.0 5.29e-01 100.0% 78.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.82e-01 88.7% 76.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.67e-01 96.8% 72.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.97e-01 100.0% 81.8%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.64 56.0 5.00e-01 100.0% 91.1%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.35e-01 93.5% 54.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.36e-01 100.0% 56.1%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.63 53.0 4.56e-01 100.0% 59.6%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.85e-01 100.0% 84.4%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 47.0 4.56e-01 83.9% 100.0%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 46.0 3.52e-01 80.6% 53.7%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.96e-01 100.0% 79.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.71e-01 95.2% 75.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 51.0 3.54e-01 100.0% 36.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.68e-01 85.5% 85.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.31e-01 98.4% 62.0%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.79e-01 80.6% 85.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.84e-01 98.4% 94.3%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 43.0 2.92e-01 80.6% 66.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 44.0 3.95e-01 100.0% 57.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.53e-01 95.2% 88.7%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.81e-01 100.0% 96.9%
1ou5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 34.0 2.64e-01 90.3% 25.7%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 47.0 3.44e-01 100.0% 63.3%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.59e-01 98.4% 90.3%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.74e-01 90.3% 73.9%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.56 47.0 3.41e-01 100.0% 34.7%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.67e-01 95.2% 93.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 40.0 4.08e-01 79.0% 89.8%
2bdvA00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.55 43.0 3.11e-01 91.9% 79.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.00e-01 96.8% 79.7%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.32e-01 95.2% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.92e-01 96.8% 72.6%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 3.63e-01 100.0% 44.1%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 4.04e-01 82.3% 98.2%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.28e-01 100.0% 93.1%
2kcoA01 2.40.10.310 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 40.0 3.79e-01 83.9% 81.6%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.48e-01 95.2% 95.2%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 4.14e-01 93.5% 88.7%
4mmhA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 41.0 2.74e-01 90.3% 44.8%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 2.91e-01 79.0% 47.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 4.01e-01 100.0% 83.8%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 2.79e-01 85.5% 30.8%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.51 44.0 3.92e-01 100.0% 74.4%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.50 43.0 3.35e-01 100.0% 42.9%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4662294 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 67.0 7.10e-01 100.0% 100.0%
4451993 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 63.0 6.48e-01 100.0% 91.7%
4656461 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 62.0 6.35e-01 100.0% 91.7%
4499953 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 62.0 6.29e-01 100.0% 91.7%
5074749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.96e-01 100.0% 80.0%
4034317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.49e-01 100.0% 96.8%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 65.0 6.00e-01 100.0% 93.8%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 65.0 5.98e-01 100.0% 91.3%
4340758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 66.0 6.35e-01 100.0% 98.6%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 60.0 5.94e-01 100.0% 87.7%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 63.0 5.67e-01 100.0% 87.1%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 62.0 5.19e-01 100.0% 65.5%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.70 62.0 5.52e-01 100.0% 72.2%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 62.0 5.30e-01 100.0% 71.0%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 62.0 5.48e-01 100.0% 74.4%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 61.0 5.39e-01 100.0% 72.2%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 61.0 5.73e-01 100.0% 85.3%
4141828 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 59.0 5.59e-01 100.0% 87.8%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.57e-01 100.0% 87.8%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.05e-01 87.1% 81.5%
4002655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.26e-01 96.8% 65.7%
4621153 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.08e-01 87.1% 86.7%
150293 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.64 55.0 4.85e-01 100.0% 81.2%
3260945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.12e-01 87.1% 93.3%
3703449 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 4.94e-01 93.5% 96.0%
4964141 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 54.0 4.87e-01 100.0% 84.4%
4020096 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 4.19e-01 100.0% 60.7%
4013325 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.63 54.0 4.37e-01 100.0% 73.6%
3575959 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 52.0 4.42e-01 98.4% 54.5%
3785886 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.62 46.0 3.23e-01 80.6% 52.7%
3612351 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.97e-01 98.4% 100.0%
3199225 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 53.0 4.54e-01 100.0% 81.9%
4593997 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.74e-01 87.1% 83.1%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.61 51.0 4.80e-01 96.8% 77.3%
3478704 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 4.52e-01 80.6% 92.3%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.00e-01 100.0% 89.9%
5012425 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 51.0 4.06e-01 100.0% 60.0%
168314 2003.1.2.114 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4, Pyr_redox_2 0.60 44.0 3.62e-01 80.6% 86.3%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.11e-01 100.0% 98.5%
3223821 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.60 50.0 4.07e-01 100.0% 93.3%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 50.0 4.31e-01 98.4% 62.0%
3637508 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.60 46.0 4.54e-01 85.5% 80.0%
3715285 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.60 50.0 3.84e-01 96.8% 43.2%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.60 49.0 4.64e-01 96.8% 77.3%
4956630 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.60 50.0 3.82e-01 96.8% 39.4%
3615426 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.59 50.0 3.81e-01 96.8% 45.3%
3243143 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 5.08e-01 100.0% 95.4%
3315166 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 49.0 4.44e-01 96.8% 66.7%
3408330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.42e-01 100.0% 62.0%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.58 49.0 4.78e-01 96.8% 85.7%
2121553 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 45.0 4.36e-01 87.1% 85.7%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.58 49.0 4.66e-01 96.8% 80.0%
3210653 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.59e-01 91.9% 86.2%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.58 47.0 4.72e-01 96.8% 89.2%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.57 44.0 4.44e-01 87.1% 83.1%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 47.0 4.83e-01 96.8% 100.0%
3549321 4.11.1.5 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.57 48.0 3.64e-01 96.8% 42.5%
344994 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.57 45.0 3.70e-01 88.7% 89.2%
4997601 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.57 46.0 3.65e-01 93.5% 95.7%
3749245 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.57 48.0 3.89e-01 100.0% 53.8%
4386702 219.1.1.45 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Mac-1 0.57 48.0 3.18e-01 100.0% 31.4%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.24e-01 100.0% 65.3%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 48.0 4.69e-01 98.4% 97.1%
3517130 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.56 44.0 4.60e-01 87.1% 98.2%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.56 46.0 3.78e-01 96.8% 49.2%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.58e-01 96.8% 96.9%
3230485 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.55 41.0 3.59e-01 82.3% 96.0%
2605151 4.25.1.1 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.55 46.0 4.41e-01 100.0% 94.6%
3888226 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 41.0 3.96e-01 85.5% 82.7%
3177469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.12e-01 87.1% 85.7%
3493511 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 45.0 3.13e-01 95.2% 37.4%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.55 46.0 4.05e-01 96.8% 63.2%
3505589 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.55 46.0 3.77e-01 96.8% 50.0%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.19e-01 100.0% 82.4%
3505711 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.54 46.0 4.21e-01 100.0% 71.8%
4615629 4.1.1.449 beta barrels › SH3 › SH3 › SH3 › DUF1292 0.53 42.0 3.83e-01 87.1% 74.1%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.53 44.0 4.02e-01 100.0% 72.2%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.53 44.0 3.23e-01 96.8% 32.4%
4512383 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 43.0 3.76e-01 95.2% 65.0%
3396896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.06e-01 96.8% 97.3%
3689402 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.51 43.0 3.74e-01 100.0% 76.2%
185630 3386.1.1.2 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › gp37_C 0.51 44.0 3.94e-01 100.0% 75.3%
4023972 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.50 41.0 3.61e-01 100.0% 66.7%